Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060070.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024805-7|AAK39344.3|  248|Caenorhabditis elegans Hypothetical ...    29   4.1  
U58734-5|AAB52504.3|  870|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>AC024805-7|AAK39344.3|  248|Caenorhabditis elegans Hypothetical
           protein Y51H7C.5 protein.
          Length = 248

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 337 SNWLVYQAADILQKYQIPHLVTRQTDSTLMKIAYRY 230
           S W VY   D +  Y +P L+ ++  +  MK A++Y
Sbjct: 121 SEWRVYWFPDRIGLYLLPSLLRKEKSTMWMKRAFKY 156


>U58734-5|AAB52504.3|  870|Caenorhabditis elegans Hypothetical
           protein T27A10.6 protein.
          Length = 870

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = -2

Query: 286 PHLVTRQTDSTLMKIAYRYFNGQVSQHSP--RNNIHVTSVSRHIYITFQRTVSTPS 125
           P   T   + T  KIA  +FN      SP  RN + VT   R     F+   +TPS
Sbjct: 535 PTTTTTTEEPTTRKIANSFFNSMEQYESPSQRNQVAVTQTPRR----FRGRTTTPS 586


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,604,763
Number of Sequences: 27780
Number of extensions: 304537
Number of successful extensions: 689
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)