Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060060.seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81106-5|CAB03223.3|  432|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL033536-12|CAD45609.2|  432|Caenorhabditis elegans Hypothetical...    29   3.1  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    28   5.4  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    28   5.4  
AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical...    28   5.4  
Z81484-2|CAB03970.2|  334|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AB275891-1|BAF34314.1|  334|Caenorhabditis elegans D-aspartate o...    28   7.1  
U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signaloso...    27   9.4  
U80029-9|AAB37588.1|  459|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U80027-12|AAC48126.2|  493|Caenorhabditis elegans Hypothetical p...    27   9.4  
AF047655-1|AAC04402.1|  558|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z81106-5|CAB03223.3|  432|Caenorhabditis elegans Hypothetical
           protein R06C1.6 protein.
          Length = 432

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 563 GHASMHYSVHISYHTKFIDHHPTASLLGLNTLAMCSSFPF 444
           GH    +  H+ +HT+F+ H  +A  L L T     + P+
Sbjct: 271 GHVMGAHHHHLPHHTRFLQHQQSAPNLRLGTQTPEEALPY 310


>AL033536-12|CAD45609.2|  432|Caenorhabditis elegans Hypothetical
           protein R06C1.6 protein.
          Length = 432

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 563 GHASMHYSVHISYHTKFIDHHPTASLLGLNTLAMCSSFPF 444
           GH    +  H+ +HT+F+ H  +A  L L T     + P+
Sbjct: 271 GHVMGAHHHHLPHHTRFLQHQQSAPNLRLGTQTPEEALPY 310


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +1

Query: 205  DDRRGRFHQKPFPLVQHGETTGIDDNVRKVLEQIDAVVPVSVRVQTGRQIFSLNNFE 375
            D +  R  + PFP + + +T  +D N+R+V   +++  PV V +      FS+NN E
Sbjct: 2461 DVKASRPLKDPFPEISNLQTFDVDVNLRRVYFVVES--PVGVNISW----FSMNNAE 2511


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +1

Query: 205  DDRRGRFHQKPFPLVQHGETTGIDDNVRKVLEQIDAVVPVSVRVQTGRQIFSLNNFE 375
            D +  R  + PFP + + +T  +D N+R+V   +++  PV V +      FS+NN E
Sbjct: 2461 DVKASRPLKDPFPEISNLQTFDVDVNLRRVYFVVES--PVGVNISW----FSMNNAE 2511


>AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical
           protein Y41D4B.4 protein.
          Length = 701

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = -2

Query: 384 NFSFKIVQREYLPSGLNAHADGNHRVDLLQHFTDVIVD-----ARRFAVLNQWERLLMES 220
           N   K+++   L +G++ + D NH  +L Q   DVI +     A    +LN++ RL    
Sbjct: 503 NVQAKLLKVHVLVNGVSRNPDANHTKELFQLLEDVITEHPHILAAYCFLLNEYARLKNSD 562

Query: 219 PASIIL 202
             + IL
Sbjct: 563 KCNEIL 568


>Z81484-2|CAB03970.2|  334|Caenorhabditis elegans Hypothetical
           protein C47A10.5 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 251 STAKRRASTITSVKCWSKSTRWFPSACAFKPDGRYSL*TILNEKFLKT 394
           STA + A  +   +    S R F   C+F P G + +  I N +F K+
Sbjct: 16  STALQVAQAVPDARVTVLSDRPFEQTCSFGPAGLFRIDDIANREFGKS 63


>AB275891-1|BAF34314.1|  334|Caenorhabditis elegans D-aspartate
           oxidase protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 251 STAKRRASTITSVKCWSKSTRWFPSACAFKPDGRYSL*TILNEKFLKT 394
           STA + A  +   +    S R F   C+F P G + +  I N +F K+
Sbjct: 16  STALQVAQAVPDARVTVLSDRPFEQTCSFGPAGLFRIDDIANREFGKS 63


>U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 5 protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 569 FGGHASMHYSVHISYHTKFIDHHPTASLLGLNTLAMCSSFP 447
           FG H   +YS+ +S+    +D H   SL     ++  SS P
Sbjct: 215 FGVHCKRYYSLDVSFFKSQLDAHILTSLWNSYWISTLSSSP 255


>U80029-9|AAB37588.1|  459|Caenorhabditis elegans Hypothetical
           protein T20D4.9 protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 182 CTFDEAVKMIDAGDSIKSLSHWFS 253
           CT DE VKM+   D++K +  WFS
Sbjct: 303 CTQDE-VKMMGDSDAVKPIDGWFS 325


>U80027-12|AAC48126.2|  493|Caenorhabditis elegans Hypothetical
           protein T28A11.17 protein.
          Length = 493

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 182 CTFDEAVKMIDAGDSIKSLSHWFS 253
           CT DE VKM+   D++K +  WFS
Sbjct: 337 CTQDE-VKMMGDSDAVKPIDGWFS 359


>AF047655-1|AAC04402.1|  558|Caenorhabditis elegans Hypothetical
           protein C17B7.8 protein.
          Length = 558

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 182 CTFDEAVKMIDAGDSIKSLSHWFS 253
           CT DE VKM+   D++K +  WFS
Sbjct: 379 CTQDE-VKMMGDSDAVKPIDGWFS 401


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,570,379
Number of Sequences: 27780
Number of extensions: 326487
Number of successful extensions: 916
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)