Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021035
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40413-2|AAK39174.1|  296|Caenorhabditis elegans Hypothetical pr...    87   2e-17
Z47808-4|CAA87772.1|  235|Caenorhabditis elegans Hypothetical pr...    77   2e-14
AF100305-5|AAN65285.1|  353|Caenorhabditis elegans Hypothetical ...    31   0.98 
AF100305-4|AAC68916.2|  426|Caenorhabditis elegans Hypothetical ...    31   0.98 
AF100305-3|AAL65795.1|  426|Caenorhabditis elegans Hypothetical ...    31   0.98 
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ...    31   1.3  
U88183-3|AAB52656.2|  593|Caenorhabditis elegans Warthog (hedgeh...    29   5.2  
AL110490-4|CAB54450.1|  474|Caenorhabditis elegans Hypothetical ...    29   5.2  
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical ...    28   6.9  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    28   9.1  
AF098501-3|AAM69106.1|  275|Caenorhabditis elegans Hypothetical ...    28   9.1  
AF098501-2|AAM69105.1|  298|Caenorhabditis elegans Hypothetical ...    28   9.1  
AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical ...    28   9.1  

>U40413-2|AAK39174.1|  296|Caenorhabditis elegans Hypothetical
           protein C18B2.4 protein.
          Length = 296

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 36/84 (42%), Positives = 58/84 (69%)
 Frame = +1

Query: 259 FKGIKEGRMYLTTHRMIYNSKKNTDAMRSFSFPFIALQDVTVEQPMFSANCIKGKVRAQP 438
           FK  K G +YLT+HR+I+ ++   D  +SF+ PF +++DV +EQP+ + N +KG V+  P
Sbjct: 41  FKSTKSGALYLTSHRIIFMNESKKDEFKSFAMPFNSVRDVKLEQPLLTPNYLKGWVQPMP 100

Query: 439 NGNFIGEVKFKLTFKSGGAIEYGQ 510
            GNF G  +++L+F  GG IE+G+
Sbjct: 101 GGNFDGCPEWRLSFPKGGCIEFGE 124



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +3

Query: 657 PYSAFPDQPPPNSVFVSNTPPPYPGV 734
           P + FP++PP  +V+V + PPPYPG+
Sbjct: 177 PTNVFPERPPAQNVYVYDMPPPYPGI 202


>Z47808-4|CAA87772.1|  235|Caenorhabditis elegans Hypothetical
           protein D2013.6 protein.
          Length = 235

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 36/83 (43%), Positives = 53/83 (63%)
 Frame = +1

Query: 262 KGIKEGRMYLTTHRMIYNSKKNTDAMRSFSFPFIALQDVTVEQPMFSANCIKGKVRAQPN 441
           +G + G +YLT+HR+I+      D ++SF  PF ++QDV + QP+F AN + G   A   
Sbjct: 42  EGRRTGTIYLTSHRIIFMPDPG-DWLKSFEIPFNSMQDVNLNQPIFGANYLCGIASAVQG 100

Query: 442 GNFIGEVKFKLTFKSGGAIEYGQ 510
           G   GEVK+++TF  GG IE+GQ
Sbjct: 101 GQMRGEVKWRMTFNRGGCIEFGQ 123



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +3

Query: 654 PPYSAFPDQPPPNSVFVSNTPPPYPGV 734
           P   +FPDQP P+ VF+S+ PPPYPG+
Sbjct: 172 PTTDSFPDQPNPSRVFMSSAPPPYPGI 198


>AF100305-5|AAN65285.1|  353|Caenorhabditis elegans Hypothetical
           protein W04B5.3c protein.
          Length = 353

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 657 PYSAFPDQPPPNSVFVSNTPPPYPGVT-GASYP 752
           PY++ P   PP+SV +S TP P P V    +YP
Sbjct: 272 PYTSVPMPQPPSSVPLSYTPAPTPSVPYTVTYP 304


>AF100305-4|AAC68916.2|  426|Caenorhabditis elegans Hypothetical
           protein W04B5.3a protein.
          Length = 426

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 657 PYSAFPDQPPPNSVFVSNTPPPYPGVT-GASYP 752
           PY++ P   PP+SV +S TP P P V    +YP
Sbjct: 272 PYTSVPMPQPPSSVPLSYTPAPTPSVPYTVTYP 304


>AF100305-3|AAL65795.1|  426|Caenorhabditis elegans Hypothetical
           protein W04B5.3b protein.
          Length = 426

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 657 PYSAFPDQPPPNSVFVSNTPPPYPGVT-GASYP 752
           PY++ P   PP+SV +S TP P P V    +YP
Sbjct: 272 PYTSVPMPQPPSSVPLSYTPAPTPSVPYTVTYP 304


>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
           protein C48E7.6 protein.
          Length = 1764

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
 Frame = -3

Query: 570 EVAKHQLPY----DE-KQDEQLLTWLSILNSTS*FEGKLEFD--LTNKVAIRLGTNFTFY 412
           ++AKH+L Y    DE + DE  L  +S  N        L F   L N  A +L  N T Y
Sbjct: 511 DIAKHRLTYSHSGDETRTDECRLLAISRQNPMRKVPLTLSFSIILLNDNAPKLAQNVTVY 570

Query: 411 TVGREHRLFHSYIL 370
            V R  R+ H ++L
Sbjct: 571 MVERGERVLHPFLL 584


>U88183-3|AAB52656.2|  593|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 6 protein.
          Length = 593

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 672 PDQPPPNSVFVSNTPPPYPGVTGASYP 752
           P  PPP+S ++ N  P  P V   +YP
Sbjct: 283 PLPPPPSSNYIDNVAPASPVVQSPAYP 309


>AL110490-4|CAB54450.1|  474|Caenorhabditis elegans Hypothetical
           protein Y48B6A.4 protein.
          Length = 474

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 582 VGYKEVAKHQLPYDEKQDEQLLTW 511
           +GY +V K +L  DE+++E++L W
Sbjct: 408 IGYLKVFKAKLDDDEEEEEEILNW 431


>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical protein
            T08G11.1b protein.
          Length = 3185

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 681  PPPNSVFVSNTPPPY 725
            PPP SV V NTP P+
Sbjct: 2680 PPPKSVIVDNTPKPF 2694


>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical protein
            T08G11.1a protein.
          Length = 3212

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 681  PPPNSVFVSNTPPPY 725
            PPP SV V NTP P+
Sbjct: 2707 PPPKSVIVDNTPKPF 2721


>AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical
           protein F54A3.6 protein.
          Length = 470

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 672 PDQPPPNSVFVSNTPPPYPGVTGASYP 752
           P+ PPP++ +    PPP P  + ++ P
Sbjct: 322 PNPPPPSAGYFFQAPPPAPASSSSTVP 348


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +3

Query: 654 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYP 752
           PP    P Q PP        P PYPG  G   P
Sbjct: 707 PPQPQQPPQGPPGPPGPQQHPGPYPGYPGYGPP 739


>AF098501-3|AAM69106.1|  275|Caenorhabditis elegans Hypothetical
           protein H28G03.2c protein.
          Length = 275

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 654 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYP 752
           PP+S  P  PPP S   +   PP P  + A  P
Sbjct: 130 PPFSVPPSVPPPTSSAAAPIVPPPPVQSTAQPP 162


>AF098501-2|AAM69105.1|  298|Caenorhabditis elegans Hypothetical
           protein H28G03.2b protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 654 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYP 752
           PP+S  P  PPP S   +   PP P  + A  P
Sbjct: 153 PPFSVPPSVPPPTSSAAAPIVPPPPVQSTAQPP 185


>AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical
           protein H28G03.2a protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 654 PPYSAFPDQPPPNSVFVSNTPPPYPGVTGASYP 752
           PP+S  P  PPP S   +   PP P  + A  P
Sbjct: 403 PPFSVPPSVPPPTSSAAAPIVPPPPVQSTAQPP 435


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,759,345
Number of Sequences: 27780
Number of extensions: 377917
Number of successful extensions: 1270
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)