Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021029X
         (361 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical pr...    27   3.0  

>Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 305 RTVGCGS*KFLLKGWSEQNPNLGDACSDLQRILFSHQILQILQIYCHRCQIEPN 144
           RTV   +   L+ G+ E   +L  +  D QR++ S +IL   +  C R Q  P+
Sbjct: 78  RTVSFPADMDLITGYHEAPSSLFHSYHDSQRVIDSSEILTAYREACQRRQCAPS 131


>Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 305 RTVGCGS*KFLLKGWSEQNPNLGDACSDLQRILFSHQILQILQIYCHRCQIEPN 144
           RTV   +   L+ G+ E   +L  +  D QR++ S +IL   +  C R Q  P+
Sbjct: 78  RTVSFPADMDLITGYHEAPSSLFHSYHDSQRVIDSSEILTAYREACQRRQCAPS 131


>Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 305 RTVGCGS*KFLLKGWSEQNPNLGDACSDLQRILFSHQILQILQIYCHRCQIEPN 144
           RTV   +   L+ G+ E   +L  +  D QR++ S +IL   +  C R Q  P+
Sbjct: 78  RTVSFPADMDLITGYHEAPSSLFHSYHDSQRVIDSSEILTAYREACQRRQCAPS 131


>Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 305 RTVGCGS*KFLLKGWSEQNPNLGDACSDLQRILFSHQILQILQIYCHRCQIEPN 144
           RTV   +   L+ G+ E   +L  +  D QR++ S +IL   +  C R Q  P+
Sbjct: 78  RTVSFPADMDLITGYHEAPSSLFHSYHDSQRVIDSSEILTAYREACQRRQCAPS 131


>Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical
           protein C45G3.1 protein.
          Length = 1186

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -3

Query: 203 SHQILQILQIYCHRCQIE----PNYRRICCLLQIWTTVSTAIIPVTGHD 69
           S ++L++ +IY  + +IE     +    C L ++WTT  T   P+  +D
Sbjct: 466 SSEVLKMCKIYGRQMEIEVMDLDSLSDGCLLAKLWTTFGTNSTPIQDYD 514


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,356,906
Number of Sequences: 27780
Number of extensions: 123710
Number of successful extensions: 304
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)