Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021023
(623 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans AP... 143 1e-34
AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans AP... 143 1e-34
Z83122-10|CAB05601.1| 896|Caenorhabditis elegans Hypothetical p... 45 4e-05
U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical p... 30 1.5
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 28 6.2
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 28 6.2
Z83122-9|CAB05598.1| 906|Caenorhabditis elegans Hypothetical pr... 27 8.2
>AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans APB-1
protein, isoform c protein.
Length = 827
Score = 143 bits (346), Expect = 1e-34
Identities = 65/84 (77%), Positives = 79/84 (94%)
Frame = +1
Query: 253 ELMEMVSADTELVSTLSRKLAPPLVTLLSAEPEVQYVALRNINLVVQKRPDILKHEMKVF 432
+L++M+ AD++ ++ L++KLAPP+VTLLSAEPE+QYVALRNINL+VQKRPDILK EMKVF
Sbjct: 262 KLIDMMPADSDFITQLTKKLAPPMVTLLSAEPEIQYVALRNINLIVQKRPDILKQEMKVF 321
Query: 433 FVKYNDPIYVKLEKLDIMIRLASQ 504
FVKYNDPIYVK+EKLDIMIRLA Q
Sbjct: 322 FVKYNDPIYVKMEKLDIMIRLAQQ 345
Score = 122 bits (295), Expect = 2e-28
Identities = 59/84 (70%), Positives = 70/84 (83%)
Frame = +2
Query: 2 AALSEINEASVSGRPLVEMNAPTINKLLTALNECTEWGQVFILDALSNYSPRDAREAHSI 181
AAL+E+NE ++E+N+ +NKLLTALNECTEWGQVFILDAL+ Y+PRD RE +I
Sbjct: 182 AALTEMNEQQT----VIEVNSQMVNKLLTALNECTEWGQVFILDALAGYTPRDERETQNI 237
Query: 182 CERITPRLAHANAAVVLSAVKVLM 253
CERI+PRLAHANAAVVLS VKVLM
Sbjct: 238 CERISPRLAHANAAVVLSTVKVLM 261
Score = 71.3 bits (167), Expect = 5e-13
Identities = 34/40 (85%), Positives = 38/40 (95%)
Frame = +3
Query: 504 SHIAQVLGELKEYATEVDVDFVRKAVRAIGRCAIKVEPSA 623
++IAQVL ELKEYATEVDVDFVRK+VRAIGRCAIKVE S+
Sbjct: 346 NNIAQVLSELKEYATEVDVDFVRKSVRAIGRCAIKVEASS 385
>AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans APB-1
protein, isoform a protein.
Length = 955
Score = 143 bits (346), Expect = 1e-34
Identities = 65/84 (77%), Positives = 79/84 (94%)
Frame = +1
Query: 253 ELMEMVSADTELVSTLSRKLAPPLVTLLSAEPEVQYVALRNINLVVQKRPDILKHEMKVF 432
+L++M+ AD++ ++ L++KLAPP+VTLLSAEPE+QYVALRNINL+VQKRPDILK EMKVF
Sbjct: 262 KLIDMMPADSDFITQLTKKLAPPMVTLLSAEPEIQYVALRNINLIVQKRPDILKQEMKVF 321
Query: 433 FVKYNDPIYVKLEKLDIMIRLASQ 504
FVKYNDPIYVK+EKLDIMIRLA Q
Sbjct: 322 FVKYNDPIYVKMEKLDIMIRLAQQ 345
Score = 122 bits (295), Expect = 2e-28
Identities = 59/84 (70%), Positives = 70/84 (83%)
Frame = +2
Query: 2 AALSEINEASVSGRPLVEMNAPTINKLLTALNECTEWGQVFILDALSNYSPRDAREAHSI 181
AAL+E+NE ++E+N+ +NKLLTALNECTEWGQVFILDAL+ Y+PRD RE +I
Sbjct: 182 AALTEMNEQQT----VIEVNSQMVNKLLTALNECTEWGQVFILDALAGYTPRDERETQNI 237
Query: 182 CERITPRLAHANAAVVLSAVKVLM 253
CERI+PRLAHANAAVVLS VKVLM
Sbjct: 238 CERISPRLAHANAAVVLSTVKVLM 261
Score = 71.3 bits (167), Expect = 5e-13
Identities = 34/40 (85%), Positives = 38/40 (95%)
Frame = +3
Query: 504 SHIAQVLGELKEYATEVDVDFVRKAVRAIGRCAIKVEPSA 623
++IAQVL ELKEYATEVDVDFVRK+VRAIGRCAIKVE S+
Sbjct: 346 NNIAQVLSELKEYATEVDVDFVRKSVRAIGRCAIKVEASS 385
>Z83122-10|CAB05601.1| 896|Caenorhabditis elegans Hypothetical
protein R11A5.1b protein.
Length = 896
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/67 (37%), Positives = 36/67 (53%)
Frame = +1
Query: 307 KLAPPLVTLLSAEPEVQYVALRNINLVVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDIM 486
++A LV LL E QYV L NI + ++ P + +K FFV+ D VK KL ++
Sbjct: 277 QIARALVRLLRGPRETQYVVLTNIATICERNPTMFDPFLKSFFVRSCDSSLVKKLKLHVL 336
Query: 487 IRLASQA 507
L S+A
Sbjct: 337 TSLVSEA 343
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 531 LKEYATEVDV-DFVRKAVRAIGRCAIKV 611
L+E T V + D AV AIGRCA++V
Sbjct: 349 LRELQTYVHMSDLASPAVEAIGRCAVRV 376
>U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical
protein T17H7.1 protein.
Length = 682
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 491 DWLPKPHSPGARGTEGVCHRSGRGLRPE---GRQGYR 592
D+ P+ PG RG+ G R GRG P+ GRQG R
Sbjct: 382 DFGPQDDFPGRRGSGGPGGRGGRGQGPDFGPGRQGGR 418
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 491 DWLPKPHSPGARGTEGVCHRSGRGLRPE 574
D+ P+ PG RG+ G R GRG P+
Sbjct: 355 DFEPQDDFPGRRGSGGPGRRGGRGQGPD 382
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical
protein T28C6.9 protein.
Length = 1861
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +1
Query: 259 MEMVSADTELVSTLSRKLAPPLVTLLSAEPE--VQYV-ALRNINLVVQKRP 402
++ +A+ L STLS APPL T S+EP Q V L I L+ Q P
Sbjct: 807 LQAANAEVPLTSTLSATTAPPL-TSESSEPSQFAQLVDGLMTILLISQNSP 856
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +2
Query: 506 PHSPGARGTEGVCHRSGRGLRPEGRQGYRQMRHQG 610
PH PG G G H R R G+ H G
Sbjct: 388 PHCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHHHG 422
>Z83122-9|CAB05598.1| 906|Caenorhabditis elegans Hypothetical
protein R11A5.1a protein.
Length = 906
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 531 LKEYATEVDV-DFVRKAVRAIGRCAIKV 611
L+E T V + D AV AIGRCA++V
Sbjct: 359 LRELQTYVHMSDLASPAVEAIGRCAVRV 386
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,297,542
Number of Sequences: 27780
Number of extensions: 219794
Number of successful extensions: 748
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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