Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021005
(734 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68298-3|CAA92600.2| 357|Caenorhabditis elegans Hypothetical pr... 69 3e-12
U21324-13|AAA62558.1| 357|Caenorhabditis elegans Hypothetical p... 66 2e-11
Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical pr... 34 0.12
Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical pr... 34 0.12
X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein. 34 0.12
X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein. 34 0.12
U53147-4|AAA96115.1| 668|Caenorhabditis elegans Temporarily ass... 28 6.0
Z82279-2|CAB05260.2| 256|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z66511-1|CAA91314.1| 537|Caenorhabditis elegans Hypothetical pr... 28 7.9
AY151209-1|AAN72826.1| 256|Caenorhabditis elegans COG-1A protein. 28 7.9
>Z68298-3|CAA92600.2| 357|Caenorhabditis elegans Hypothetical
protein F44D12.4 protein.
Length = 357
Score = 68.9 bits (161), Expect = 3e-12
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +1
Query: 487 FLYFKYSQVDMKKLLGGQIGLEDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIK 666
FL + DMK + G + +D +FAH +G+ E+ +VK + G+T+TDNG G AFIK
Sbjct: 104 FLTVNDFKPDMKNMFSGTLNFKDMLFAHVRGQATELRMVKDANVFGVTVTDNGLGNAFIK 163
Query: 667 RIKEGSIVXRI-PHIEVGDHIE 729
I GS+ R+ P +VG IE
Sbjct: 164 VISPGSVFDRMRPATQVGQLIE 185
Score = 55.6 bits (128), Expect = 3e-08
Identities = 25/59 (42%), Positives = 39/59 (66%)
Frame = +2
Query: 362 QLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDILFCTLNTHKWI*KNFSEG 538
+L F CQ AHGSP+ +I +++++ELY+ IA+ + S +DI+F T+N K KN G
Sbjct: 62 ELKFPCQLAHGSPVAIIDKWNDMEELYQSIADFFAISKDDIIFLTVNDFKPDMKNMFSG 120
>U21324-13|AAA62558.1| 357|Caenorhabditis elegans Hypothetical
protein C35D10.2 protein.
Length = 357
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/59 (49%), Positives = 41/59 (69%)
Frame = +2
Query: 362 QLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDILFCTLNTHKWI*KNFSEG 538
QL F CQ AHGSP+G+I ++N++ELY+ IA+C+ S +DI+F T+N K KN G
Sbjct: 62 QLKFACQMAHGSPVGIIDKWNNMEELYQSIADCFTISKDDIIFLTVNDFKPDMKNMFTG 120
Score = 64.9 bits (151), Expect = 6e-11
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +1
Query: 487 FLYFKYSQVDMKKLLGGQIGLEDFIFAHRKGRPKEIEIVKTEDALGLTITDNGAGYAFIK 666
FL + DMK + G + +D +FAH +G+ E+ +VK G+TITDNG G AFIK
Sbjct: 104 FLTVNDFKPDMKNMFTGTLNFKDMLFAHIRGQATELRVVKDAKNFGVTITDNGLGNAFIK 163
Query: 667 RIKEGSIVXRI-PHIEVGDHIE 729
I S+ R+ P +VG IE
Sbjct: 164 VISPDSVFDRMRPATQVGQLIE 185
>Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical
protein F17E5.1b protein.
Length = 620
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 607 TEDALGLTITDNGAGYAFIKRIKEGSIVXRIPHIEVGDHIEK 732
T++ +G+T+ N G F+ RI G ++ R + VGD I +
Sbjct: 212 TQEPMGITLKVNEDGRCFVARIMHGGMIHRQATLHVGDEIRE 253
>Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical
protein F17E5.1a protein.
Length = 961
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 607 TEDALGLTITDNGAGYAFIKRIKEGSIVXRIPHIEVGDHIEK 732
T++ +G+T+ N G F+ RI G ++ R + VGD I +
Sbjct: 553 TQEPMGITLKVNEDGRCFVARIMHGGMIHRQATLHVGDEIRE 594
>X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein.
Length = 620
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 607 TEDALGLTITDNGAGYAFIKRIKEGSIVXRIPHIEVGDHIEK 732
T++ +G+T+ N G F+ RI G ++ R + VGD I +
Sbjct: 212 TQEPMGITLKVNEDGRCFVARIMHGGMIHRQATLHVGDEIRE 253
>X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein.
Length = 961
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 607 TEDALGLTITDNGAGYAFIKRIKEGSIVXRIPHIEVGDHIEK 732
T++ +G+T+ N G F+ RI G ++ R + VGD I +
Sbjct: 553 TQEPMGITLKVNEDGRCFVARIMHGGMIHRQATLHVGDEIRE 594
>U53147-4|AAA96115.1| 668|Caenorhabditis elegans Temporarily
assigned gene nameprotein 117 protein.
Length = 668
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 586 KEIEIVKTEDA-LGLTITDNGAGYAFIKRIKEGSIVXRIPHIEVGDHI 726
K +E+VK ED+ LG T+ N + R+ +G IV ++ + GD +
Sbjct: 234 KVVEVVKDEDSYLGATVR-NENNKIIVGRVVKGGIVEKMNLFQEGDEL 280
>Z82279-2|CAB05260.2| 256|Caenorhabditis elegans Hypothetical
protein R03C1.3a protein.
Length = 256
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 471 ENS*HSAIFSYNSLTLEKPEMRPNG 397
EN HS+ +S ++L LEK E P+G
Sbjct: 20 ENRKHSSTYSISNLLLEKKESSPSG 44
>Z66511-1|CAA91314.1| 537|Caenorhabditis elegans Hypothetical
protein F07A11.1 protein.
Length = 537
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 511 VDMKKLLGGQIGLEDFIFAHRKGRPKEIEIVKTEDA 618
++MKK LE++IF H R +++E+ +DA
Sbjct: 257 IEMKKRRPKSPVLENYIFRHESPRSRDVEVRTRKDA 292
>AY151209-1|AAN72826.1| 256|Caenorhabditis elegans COG-1A protein.
Length = 256
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 471 ENS*HSAIFSYNSLTLEKPEMRPNG 397
EN HS+ +S ++L LEK E P+G
Sbjct: 20 ENRKHSSTYSISNLLLEKKESSPSG 44
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,880,469
Number of Sequences: 27780
Number of extensions: 327442
Number of successful extensions: 675
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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