Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021003
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47358-8|CAA87433.1|  702|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr...    28   4.6  

>Z47358-8|CAA87433.1|  702|Caenorhabditis elegans Hypothetical
           protein ZK1307.6 protein.
          Length = 702

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = +2

Query: 2   SSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHDAYVGAMVTVGTMA 181
           SS   S S++   G +   P S+  +  S   QH +H S  S  YHD Y G     G  +
Sbjct: 111 SSTHPSSSSLAGLGALATAPSSSQSSLSSHPHQHHNHHSSSSSSYHDYYQGTSSGSGNTS 170

Query: 182 LT 187
            T
Sbjct: 171 PT 172


>Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical
           protein C01G12.7 protein.
          Length = 584

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +2

Query: 23  SNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHDAYVGAMVTVGTMALTLIMIY 202
           SN+ R    L   +S   T  SP S +++ PSD    Y D  +   V +G  AL L++ +
Sbjct: 70  SNMPRPTQGLSEIMSTTTTTGSPLSIYSTTPSDAPETYSDTVLS--VVLGFYALLLLIAF 127

Query: 203 GA 208
            +
Sbjct: 128 AS 129


>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
           protein C11E4.6 protein.
          Length = 1170

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 35  RTGDVLPTPLSNVETRPSPYSQHASHPSDH 124
           R+ D LPT L NV TRP+     +  P D+
Sbjct: 432 RSSDTLPTRLKNVRTRPTEKQIASVLPGDN 461


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,844,441
Number of Sequences: 27780
Number of extensions: 221600
Number of successful extensions: 685
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)