Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0033
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41037-1|AAA82387.1|  629|Caenorhabditis elegans Gtpase activati...    29   4.0  
AF118123-1|AAD13781.1|  629|Caenorhabditis elegans GTPase activa...    29   4.0  
Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical p...    28   5.3  
AF039050-4|AAC47937.1|  499|Caenorhabditis elegans Cytochrome p4...    28   5.3  
Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U41037-1|AAA82387.1|  629|Caenorhabditis elegans Gtpase activating
           protein familyprotein 1 protein.
          Length = 629

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 235 LIKILRMFFRDLQSTVKSFFYGQIRVR-DANAHTHPHNWQHIR 110
           ++ +    ++DL   + S F+GQ+RV  D N  + P  W ++R
Sbjct: 58  MLSLKLTLWQDLLKGINSVFHGQVRVDVDENWKSGPAKWFYLR 100


>AF118123-1|AAD13781.1|  629|Caenorhabditis elegans GTPase
           activating protein GAP-1 protein.
          Length = 629

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 235 LIKILRMFFRDLQSTVKSFFYGQIRVR-DANAHTHPHNWQHIR 110
           ++ +    ++DL   + S F+GQ+RV  D N  + P  W ++R
Sbjct: 58  MLSLKLTLWQDLLKGINSVFHGQVRVDVDENWKSGPAKWFYLR 100


>Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical
           protein F14F8.13 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 253 TQFVFVLIKILRMFFRDLQSTVKSFFYGQIRVRDANAHTHPHNWQHIRLR 104
           ++F  V   IL  F   + S +  F Y  I + D N + H H+ QHI L+
Sbjct: 183 SEFCIVCYIILFAFLNFVISVLTPFIYIPIMI-DINKNQHLHSQQHIYLQ 231


>AF039050-4|AAC47937.1|  499|Caenorhabditis elegans Cytochrome p450
           family protein 34A7 protein.
          Length = 499

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 44  FGGKKTGCVTFRKQYHRLYYTQTDMLPIVRVC 139
           +GG   G   FRKQY +++      +P V++C
Sbjct: 48  YGGLVAGFDQFRKQYGKVFTVWMGPIPAVQIC 79


>Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical
           protein F14F8.12 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 244 VFVLIKILRMFFRDLQSTVKSFFYGQIRVRDANAHTHPHNWQHIRLR 104
           +F    I  +FF  + S +  F Y  I + D N + H H+ QHI L+
Sbjct: 155 IFECFIISFVFFNFVISVLTPFIYIPIMI-DINKNQHLHSQQHIYLQ 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,044,721
Number of Sequences: 27780
Number of extensions: 316694
Number of successful extensions: 694
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)