Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0020
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   318   2e-87
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    65   4e-11
Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   5.5  
AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  318 bits (781), Expect = 2e-87
 Identities = 141/211 (66%), Positives = 179/211 (84%)
 Frame = +3

Query: 63  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 242
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 243 MRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLS 422
           +RKA++ HL  NP+LEKLLPHI  NVGFVFT+ DL E+R KLLEN+  APA+ GAIAP  
Sbjct: 61  IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCD 120

Query: 423 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 602
           V +P  NTG+GPEKTSFFQAL IPTKI++GTIEI+NDVH++K GDKVGASE+ LLNML +
Sbjct: 121 VKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGV 180

Query: 603 SPFSYGLVVKQVYDSGTIFAPEILDIKPEDL 695
           +PFSYGLVV+QVYD GT++ PE+LD+  E+L
Sbjct: 181 TPFSYGLVVRQVYDDGTLYTPEVLDMTTEEL 211


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 50/202 (24%), Positives = 89/202 (44%), Gaps = 3/202 (1%)
 Frame = +3

Query: 36  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 215
           R    +L+++ ++ K T K+N   ++   +D+Y   FI    N+ S +   IR   + +S
Sbjct: 6   RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64

Query: 216 IVLMGKNTMMRKAIKDHLDNNPA--LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQA 389
               GKN ++  A+     +  A  L K    +KG  G +FT     EV  +  E   + 
Sbjct: 65  RFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEED 124

Query: 390 PARPGAIAPLSVVIP-AHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVG 566
            AR G +A  +VV+P    +          + L +PTK+ KG I +     + K G+ + 
Sbjct: 125 YARVGDVATETVVLPEGPISQFAFSMEPQLRKLGLPTKLDKGVITLYQQFEVCKEGEPLT 184

Query: 567 ASEATLLNMLNISPFSYGLVVK 632
             +A +L    +    + L+ K
Sbjct: 185 VEQAKILKHFEVKMSQFRLIFK 206


>Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical
           protein T06E6.10 protein.
          Length = 249

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/56 (23%), Positives = 21/56 (37%)
 Frame = +1

Query: 211 PVSCSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRT 378
           P  C+  +   C      T   ++P+  C H +  T   CSP +        C+ T
Sbjct: 109 PAGCAMVRPSGCMDSPTMTGCELKPT--CIHVNACTTTKCSPGKKCALHTVQCFTT 162


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +3

Query: 18  LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 131
           L+ K   S ++ +SR+ +EDK +  SN+++K  QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 427 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 317
           TT      P  AG WT+ +N ++R  TR P    +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227


>AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical
           protein Y67D8B.2 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 366 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 515
           +L   +Q  A   A+  L+  +P   TGL P +   FQAL  P  I+  T
Sbjct: 42  VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89


>Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical
           protein T23G5.1 protein.
          Length = 788

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 5/158 (3%)
 Frame = +3

Query: 81  ATWKSNYFVKIIQLLDEYP---KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRK 251
           A W  + F+K ++   E+     C   G D+   ++ + +         V   + T+  +
Sbjct: 337 ALWIPDLFMKRVEKDQEWSLMCPCECPGLDDCWGEEFEALYAKYEAEGRV---RKTVKAR 393

Query: 252 AIKDHLDNNPALEKLLPHI--KGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSV 425
            + +H+ +N  +E  LP+I  K        + +L  ++   L  ++   + P  IA  ++
Sbjct: 394 KLWEHIVSNQ-IETGLPYITYKDAANRKSNQQNLGTIKCSNLCTEIIEYSAPDEIAVCNL 452

Query: 426 VIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVH 539
              A N  + PEK   F  L+  TK+    +  I DV+
Sbjct: 453 ASIALNRYVTPEKKFDFVKLAEVTKVITRNLNKIIDVN 490


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,651,064
Number of Sequences: 27780
Number of extensions: 386749
Number of successful extensions: 1238
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)