Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0014
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    28   3.1  
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    28   3.1  
AL032675-1|CAA21779.1|  963|Caenorhabditis elegans Hypothetical ...    28   4.1  
AY303575-1|AAP57297.1|  382|Caenorhabditis elegans cell death-re...    27   5.5  
AC024791-9|AAF60653.1|  382|Caenorhabditis elegans Cell-death-re...    27   5.5  
Z81147-6|CAB03535.1|  506|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z81097-5|CAB03168.1|  243|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U41546-4|AAC48218.1|  150|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 309 RFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAK 190
           R+   + R++   +TN+++ +CLTT     + +  Q+H K
Sbjct: 493 RYPKPWKRSAWCDSTNTTTLNCLTTEGAKLSTKENQKHCK 532


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -1

Query: 309 RFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAK 190
           R+   + R++   +TN+++ +CLTT     + +  Q+H K
Sbjct: 493 RYPKPWKRSAWCDSTNTTTLNCLTTEGAKLSTKENQKHCK 532


>AL032675-1|CAA21779.1|  963|Caenorhabditis elegans Hypothetical
           protein VT23B5.1 protein.
          Length = 963

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -1

Query: 381 IRDFLPDLCCTSTSIGTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTT 235
           + D L  +CC +  + T    T        D  S  GNT  +   CLT+
Sbjct: 455 VMDLLKKICCDNLQVNTSKNDT--IIDAILDNISESGNTRKTQIACLTS 501


>AY303575-1|AAP57297.1|  382|Caenorhabditis elegans cell
           death-related nuclease 1 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +2

Query: 146 EMSYGIERFFLLSYCLACCW----PGLGAKNNLRVVRQWAELEFVFPNEEARSY 295
           EM   +E F  L   L C +     G+G K  + ++RQ   +E +  N +   Y
Sbjct: 215 EMKLSVEEFIDLCILLGCDYCGTIRGVGPKKAVELIRQHKNIETILENIDQNKY 268


>AC024791-9|AAF60653.1|  382|Caenorhabditis elegans
           Cell-death-related nuclease protein1 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +2

Query: 146 EMSYGIERFFLLSYCLACCW----PGLGAKNNLRVVRQWAELEFVFPNEEARSY 295
           EM   +E F  L   L C +     G+G K  + ++RQ   +E +  N +   Y
Sbjct: 215 EMKLSVEEFIDLCILLGCDYCGTIRGVGPKKAVELIRQHKNIETILENIDQNKY 268


>Z81147-6|CAB03535.1|  506|Caenorhabditis elegans Hypothetical
           protein T09E11.8 protein.
          Length = 506

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 129 WMLLNWKC-RTESSDFFYCHIVWRAVGPVS 215
           W  + W C  T  SD+FYC +  R  G VS
Sbjct: 74  WKPIRWFCLNTTCSDYFYCSMATR-FGSVS 102


>Z81097-5|CAB03168.1|  243|Caenorhabditis elegans Hypothetical
           protein K07A1.7 protein.
          Length = 243

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 140 KLEMSYGIERFFLLSYCLACCWPGLGAKN 226
           K E+S    RF+L   C  C W     KN
Sbjct: 136 KTEISLDGRRFYLQQLCARCLWSDWSCKN 164


>U41546-4|AAC48218.1|  150|Caenorhabditis elegans Hypothetical
           protein T25B6.3 protein.
          Length = 150

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 122 QLLDAFKLEMSYGIERFFLLSYCLACCWPGLGAKNNLRVVRQWAELEFV 268
           +L +  K++MS   +  F   +    CW  L  KN L    +W ++EF+
Sbjct: 32  ELNNLAKVDMSSASKELFQ-EFMSTLCWNNLTPKNFLENYIRWEKVEFL 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,371,268
Number of Sequences: 27780
Number of extensions: 250244
Number of successful extensions: 680
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)