Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0011
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily ass...    32   0.33 
Z78061-2|CAB01493.1|  474|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ...    28   5.4  
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z68882-1|CAA93105.1|  487|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 130 protein.
          Length = 756

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 364 FLYVLDYIMQFLDYISNYYKNTTVIAFIRVIKYTCAEIYF 483
           F+Y++ YI+  + Y     K    + F  VI +TCA I F
Sbjct: 651 FIYIIYYILMKMIYREKIPKRAIALLFAAVISWTCAGILF 690


>Z78061-2|CAB01493.1|  474|Caenorhabditis elegans Hypothetical
           protein C48G7.2 protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = -2

Query: 656 VQVYAKKKNENLNFLNIHSNKTYNVKLKDEL 564
           + V  KKK+ENLNF N    K Y  KL DEL
Sbjct: 416 ISVSRKKKSENLNFEN---RKNYK-KLSDEL 442


>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6b protein.
          Length = 1345

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +1

Query: 28  NFEFSGT-IEFR*NEFCTYFELRLRVGAGSRRGQRCSRAQVEALQEN*ESGTQRSRWINQ 204
           +F++ G  I    N    YF +R R+  G++RG+R S +  +   E  + G +++   N+
Sbjct: 624 HFQYIGDKIGLTANFVSNYFTIRKRMSKGAKRGERLSDSDDDD-DEPEDDGEEKNEEKNE 682

Query: 205 SGSSYSRHRASKIIRKVDFI 264
             +  +  +A K  +  + +
Sbjct: 683 EEARKAAEKAEKAQKMTEML 702


>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6a protein.
          Length = 1343

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +1

Query: 28  NFEFSGT-IEFR*NEFCTYFELRLRVGAGSRRGQRCSRAQVEALQEN*ESGTQRSRWINQ 204
           +F++ G  I    N    YF +R R+  G++RG+R S +  +   E  + G +++   N+
Sbjct: 622 HFQYIGDKIGLTANFVSNYFTIRKRMSKGAKRGERLSDSDDDD-DEPEDDGEEKNEEKNE 680

Query: 205 SGSSYSRHRASKIIRKVDFI 264
             +  +  +A K  +  + +
Sbjct: 681 EEARKAAEKAEKAQKMTEML 700


>Z68882-1|CAA93105.1|  487|Caenorhabditis elegans Hypothetical
           protein C47E12.1 protein.
          Length = 487

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 238 CLPYDGYSWTRFD*SIANVASHF 170
           C P D  SWT FD  I N  S++
Sbjct: 330 CSPNDNESWTLFDEMIGNAESYY 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,125,282
Number of Sequences: 27780
Number of extensions: 235213
Number of successful extensions: 562
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)