SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0010
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47356-7|CAD31695.1|  249|Caenorhabditis elegans Hypothetical pr...   122   3e-28
AF016428-7|AAB65361.1|  439|Caenorhabditis elegans Dnaj domain (...   111   7e-25
Z47356-1|CAA87414.2|   82|Caenorhabditis elegans Hypothetical pr...   101   5e-22
Z66513-5|CAA91334.1|  331|Caenorhabditis elegans Hypothetical pr...    86   3e-17
Z92834-5|CAB07390.1|  402|Caenorhabditis elegans Hypothetical pr...    84   9e-17
L12018-4|AAK68342.1|  456|Caenorhabditis elegans Dnaj domain (pr...    35   0.070
L12018-3|AAK68343.1|  446|Caenorhabditis elegans Dnaj domain (pr...    35   0.070
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z32679-2|CAA83592.1|  385|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>Z47356-7|CAD31695.1|  249|Caenorhabditis elegans Hypothetical
           protein T15H9.7 protein.
          Length = 249

 Score =  122 bits (294), Expect = 3e-28
 Identities = 50/87 (57%), Positives = 66/87 (75%)
 Frame = -3

Query: 742 SRTRKCNCRQEMVTRNLGPGRFQMMQQTVCDECPNVKFVNEERLLEIKVEVGAPDGHKSR 563
           S TR+CNCR EM T  +G GRFQM Q  VCDECPNVK V E ++LE++VEVGA +GH+  
Sbjct: 163 SGTRQCNCRHEMRTEQMGQGRFQMFQVKVCDECPNVKLVQENKVLEVEVEVGADNGHQQI 222

Query: 562 LRGEGEPHVDGEPGDLIVILKTERHPQ 482
             GEGEPH++G+PGDL   ++ ++HP+
Sbjct: 223 FHGEGEPHIEGDPGDLKFKIRIQKHPR 249


>AF016428-7|AAB65361.1|  439|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 19 protein.
          Length = 439

 Score =  111 bits (266), Expect = 7e-25
 Identities = 59/164 (35%), Positives = 92/164 (56%), Gaps = 3/164 (1%)
 Frame = -3

Query: 655 CDECPNVKFVNEERLLEIKVEVGAPDGHKSRLRGEGEPH-VDGEPGDLIVILKTERHPQF 479
           C  C   K+ N  ++LE+ V  G     K   +G+G+    DGEPGD++++++ + H  F
Sbjct: 228 CKGCHGEKYENVSKILEVHVLPGMKHNDKITFKGDGDQSDPDGEPGDVVIVIQQKDHDIF 287

Query: 478 TRKADDLYTNVTISLQDALTGFTLELEHLDGHKVSVS--RDKVTWAGARVRKKGEGMPNF 305
            R  DDL+    +SL +AL G+   ++HLDGH + +S  +  V   G      G+GMPN 
Sbjct: 288 KRDGDDLHMTKKLSLNEALCGYNFLIKHLDGHPLVLSSKQGDVIKPGVIRGVLGKGMPNK 347

Query: 304 ENNNLHGNLYVTFDIEFPKQDFTDAEKEALRKILNQPPNNKIYN 173
           +   L GNL+V F++EFPK+ F D EK A   + +  P +K+ N
Sbjct: 348 KYPELKGNLFVEFEVEFPKEHFLDDEK-AYAVLKSCFPTSKVVN 390


>Z47356-1|CAA87414.2|   82|Caenorhabditis elegans Hypothetical
           protein T15H9.1 protein.
          Length = 82

 Score =  101 bits (242), Expect = 5e-22
 Identities = 47/82 (57%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
 Frame = -3

Query: 409 LELEHLDGHKVSVSRDKVTWAGARVRKKGEGMPNFENNNLHGNLYVTFDIEFPKQDFTDA 230
           +E++HLDGH V V RDKVTW GAR+RKK EGMP+ E+NN  G L VTFD+EFPK + +D 
Sbjct: 1   MEIQHLDGHIVKVQRDKVTWPGARLRKKDEGMPSLEDNNKKGMLVVTFDVEFPKTELSDE 60

Query: 229 EKEALRKILNQ-PPNNKIYNGL 167
           +K  + +IL Q     K YNGL
Sbjct: 61  QKAQIIEILQQNTVKPKAYNGL 82


>Z66513-5|CAA91334.1|  331|Caenorhabditis elegans Hypothetical
           protein F54D5.8 protein.
          Length = 331

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 41/126 (32%), Positives = 70/126 (55%)
 Frame = -3

Query: 622 EERLLEIKVEVGAPDGHKSRLRGEGEPHVDGEPGDLIVILKTERHPQFTRKADDLYTNVT 443
           E+++L + ++ G   G K     EG+ H +  P D++ ++K + HP+F R+  D+     
Sbjct: 193 EDKVLTVTIKPGWKSGTKITFPKEGDQHPNRTPADIVFVIKDKPHPKFKREGSDIKRVEK 252

Query: 442 ISLQDALTGFTLELEHLDGHKVSVSRDKVTWAGARVRKKGEGMPNFENNNLHGNLYVTFD 263
           ISL+ ALTG  + +  LDG    +  + V   G   R  G+G+PN ++ +  G+L + FD
Sbjct: 253 ISLKSALTGLDIMIPTLDGADYRLQLNDVIKPGTTRRLTGKGLPNPKSPSHRGDLIIEFD 312

Query: 262 IEFPKQ 245
           +EFP Q
Sbjct: 313 VEFPSQ 318


>Z92834-5|CAB07390.1|  402|Caenorhabditis elegans Hypothetical
           protein F39B2.10 protein.
          Length = 402

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
 Frame = -3

Query: 670 MQQTVCDECPNVKFVNEERLLEIKVEVGAPDGHKSRLRGEGEPHVDGE-PGDLIVILKTE 494
           +++  C +C   K V E+ ++E+ +  G  DG K    G+G+  +  E PGD +V+L   
Sbjct: 189 LEKDRCKKCNGKKQVKEDEIIEVGITPGMKDGEKFVFEGKGDEVIGIEKPGDFVVVLDEV 248

Query: 493 RHPQFTRKADDLYTNVTISLQDALTGFTLELEHLDGHKV---SVSRDKVTWAGARVRKKG 323
            H +F RK D+L     I L +AL GF   +  LDG  +    +  + +  A  +V    
Sbjct: 249 EHEKFVRKGDNLIIQHNIDLSEALCGFVRTISTLDGRTIFYRVLPGEVIAHADVKV-IHN 307

Query: 322 EGMPNFENNNLHGNLYVTFDIEFPKQDFTDAEKE 221
           EGMP    ++  G+L V FD++FP +   DA K+
Sbjct: 308 EGMPMRRASSDKGDLLVQFDVKFPDKINPDAAKK 341


>L12018-4|AAK68342.1|  456|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 10, isoform a
           protein.
          Length = 456

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 31/136 (22%), Positives = 58/136 (42%)
 Frame = -3

Query: 655 CDECPNVKFVNEERLLEIKVEVGAPDGHKSRLRGEGEPHVDGEPGDLIVILKTERHPQFT 476
           C EC       + R +   V  G  +G   + +  G+         L V        +F 
Sbjct: 245 CQECEGEGQTVQRRQVSFNVPAGTNNGDSLKFQ-VGK-------NQLFVRFNVAPSLKFR 296

Query: 475 RKADDLYTNVTISLQDALTGFTLELEHLDGHKVSVSRDKVTWAGARVRKKGEGMPNFENN 296
           R+ DD++ +V ISL  A+ G T+++  ++G    V     T +  ++R  G+G+    + 
Sbjct: 297 REKDDIHCDVDISLAQAVLGGTVKVPGING-DTYVHIPAGTGSHTKMRLTGKGVKRLHSY 355

Query: 295 NLHGNLYVTFDIEFPK 248
             +G+ Y+   +  PK
Sbjct: 356 G-NGDQYMHIKVTVPK 370


>L12018-3|AAK68343.1|  446|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 10, isoform b
           protein.
          Length = 446

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 31/136 (22%), Positives = 58/136 (42%)
 Frame = -3

Query: 655 CDECPNVKFVNEERLLEIKVEVGAPDGHKSRLRGEGEPHVDGEPGDLIVILKTERHPQFT 476
           C EC       + R +   V  G  +G   + +  G+         L V        +F 
Sbjct: 245 CQECEGEGQTVQRRQVSFNVPAGTNNGDSLKFQ-VGK-------NQLFVRFNVAPSLKFR 296

Query: 475 RKADDLYTNVTISLQDALTGFTLELEHLDGHKVSVSRDKVTWAGARVRKKGEGMPNFENN 296
           R+ DD++ +V ISL  A+ G T+++  ++G    V     T +  ++R  G+G+    + 
Sbjct: 297 REKDDIHCDVDISLAQAVLGGTVKVPGING-DTYVHIPAGTGSHTKMRLTGKGVKRLHSY 355

Query: 295 NLHGNLYVTFDIEFPK 248
             +G+ Y+   +  PK
Sbjct: 356 G-NGDQYMHIKVTVPK 370


>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical protein
            W02C12.1 protein.
          Length = 1372

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 718  RQEMVTRNLGPGRFQMMQQTVCDECPNVKFVNEERLLEIKVEVGAPD 578
            R++  T    PG+F + +   C  CP   F NEE+  E   ++ APD
Sbjct: 1090 REQCNTPKCKPGQFLVKETKNCQFCPRGTFQNEEQ--ESTCKLCAPD 1134


>Z32679-2|CAA83592.1|  385|Caenorhabditis elegans Hypothetical
           protein C05B5.2 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 153 VYYHYSPLYILLFGGWFS-IFRKASF 227
           +YY Y  L +L+  GWF  +FRK  F
Sbjct: 261 LYYAYIALTVLMLTGWFDFVFRKHCF 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,631,519
Number of Sequences: 27780
Number of extensions: 353179
Number of successful extensions: 1023
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -