Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0004
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40411-4|AAC47065.1|  440|Caenorhabditis elegans Temporarily ass...    30   1.6  
U00067-1|AAK20074.1|  305|Caenorhabditis elegans Hypothetical pr...    29   2.8  

>U40411-4|AAC47065.1|  440|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 320 protein.
          Length = 440

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +3

Query: 6   SPGLQANSTSEGAEMPKAVTTEPWDGKDG 92
           S G    S+  G   PK   TE WDGKDG
Sbjct: 392 SYGKGRTSSLRGDGFPKIQKTEKWDGKDG 420


>U00067-1|AAK20074.1|  305|Caenorhabditis elegans Hypothetical
           protein F54E7.5 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 626 YLLIICYVL*QITILCIVIFLMTL 555
           +LLI C +L  +T  CI++F +TL
Sbjct: 187 HLLIACLILLCLTTFCIIVFFITL 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,053,641
Number of Sequences: 27780
Number of extensions: 202230
Number of successful extensions: 348
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)