Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_A09
         (968 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    33   0.23 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    33   0.23 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    33   0.23 
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    32   0.71 
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   1.2  
AL117204-23|CAB55137.1|  285|Caenorhabditis elegans Hypothetical...    31   1.6  
Z68219-2|CAA92476.1|  300|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U29096-1|AAA68406.1|  105|Caenorhabditis elegans Neuropeptide-li...    29   3.8  
AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen prot...    29   5.0  
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr...    29   6.6  
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr...    29   6.6  
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    29   6.6  
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    29   6.6  
Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    28   8.7  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 23/69 (33%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
 Frame = +2

Query: 716 GRXGXXXXPPNXKXPXPPPXKPXXSLFWXXXPXFSPPHXXPXXPAPXRXG-----XXGXP 880
           G  G    PP    P PPP K    L     P   PP      P P R G       G P
Sbjct: 224 GFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSP---PPPPAAGSPPPPRTGSPPPPPTGSP 280

Query: 881 XPPQRXGTP 907
            PP   G+P
Sbjct: 281 PPPPAGGSP 289


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 23/69 (33%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
 Frame = +2

Query: 716 GRXGXXXXPPNXKXPXPPPXKPXXSLFWXXXPXFSPPHXXPXXPAPXRXG-----XXGXP 880
           G  G    PP    P PPP K    L     P   PP      P P R G       G P
Sbjct: 245 GFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSP---PPPPAAGSPPPPRTGSPPPPPTGSP 301

Query: 881 XPPQRXGTP 907
            PP   G+P
Sbjct: 302 PPPPAGGSP 310


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 23/69 (33%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
 Frame = +2

Query: 716 GRXGXXXXPPNXKXPXPPPXKPXXSLFWXXXPXFSPPHXXPXXPAPXRXG-----XXGXP 880
           G  G    PP    P PPP K    L     P   PP      P P R G       G P
Sbjct: 230 GFRGKRQAPPAGSPPPPPPPKGSPPLAGSGSP---PPPPAAGSPPPPRTGSPPPPPTGSP 286

Query: 881 XPPQRXGTP 907
            PP   G+P
Sbjct: 287 PPPPAGGSP 295


>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical protein
            T16G12.5 protein.
          Length = 1142

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +3

Query: 177  PKEDNSLNTLAESAKKTIEELREKVESALAP----ETVKKNFGTMVDSFNEFYKNLKPAE 344
            P ED S N   + AKK + +L+  V    AP     T ++ +   VD  NE+ + L   E
Sbjct: 834  PSEDVSFNLAVDEAKKLLRDLKIDVNQVNAPTLPQRTDRQRYNQQVDVCNEWIEELHDDE 893


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
 Frame = +2

Query: 713 RGRXGXXXXPPNXKXPXPPPXKPXXSLFWXXXP-----XFSPPHXXPXXPAPXRXGXXG- 874
           +G+      PP    P PPP  P   +     P      + PP   P    P   G  G 
Sbjct: 257 QGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGM 316

Query: 875 -XPXPPQRXGTP 907
             P PP R G P
Sbjct: 317 PPPPPPSRFGPP 328


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
 Frame = +2

Query: 713 RGRXGXXXXPPNXKXPXPPPXKPXXSLFWXXXP-----XFSPPHXXPXXPAPXRXGXXG- 874
           +G+      PP    P PPP  P   +     P      + PP   P    P   G  G 
Sbjct: 267 QGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGM 326

Query: 875 -XPXPPQRXGTP 907
             P PP R G P
Sbjct: 327 PPPPPPSRFGPP 338


>AL117204-23|CAB55137.1|  285|Caenorhabditis elegans Hypothetical
           protein Y116A8C.35 protein.
          Length = 285

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = -3

Query: 900 PXRWGGXGXPXXPXRXGAGXXGXXWGGEXXGXXXQKREXXGFXGGGXGXFXXGG 739
           P + GG G        G    G  WGG   G   + R+  G+ GGG G    GG
Sbjct: 209 PSQRGGSGGGGGGGGGGGYGSGGGWGG---GGGGRDRDRGGWGGGGGGRGYGGG 259


>Z68219-2|CAA92476.1|  300|Caenorhabditis elegans Hypothetical
           protein T05A1.2 protein.
          Length = 300

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 19/62 (30%), Positives = 20/62 (32%)
 Frame = +2

Query: 716 GRXGXXXXPPNXKXPXPPPXKPXXSLFWXXXPXFSPPHXXPXXPAPXRXGXXGXPXPPQR 895
           G  G    P     P  PP  P   L     P   PP       AP + G  G P PP  
Sbjct: 116 GTPGRPGAPGAPGHPGKPPQSPCEPLTPPPCPA-CPPGPPGAPGAPGKPGSEGPPGPPGH 174

Query: 896 XG 901
            G
Sbjct: 175 DG 176


>U29096-1|AAA68406.1|  105|Caenorhabditis elegans Neuropeptide-like
           protein protein32 protein.
          Length = 105

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = -3

Query: 891 WGGXGXPXXPXRXGAGXXGXXWGGEXXGXXXQKREXXGFXGGG 763
           WGG G        G G  G  WGG   G   +     GF GGG
Sbjct: 58  WGGRGGWGRGGGRGYGGRGGGWGGR-GGGWGRGGGGRGFYGGG 99


>AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen protein
           68 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/54 (31%), Positives = 19/54 (35%)
 Frame = +2

Query: 740 PPNXKXPXPPPXKPXXSLFWXXXPXFSPPHXXPXXPAPXRXGXXGXPXPPQRXG 901
           PP    P  PP +P         P   PP       AP   G  G P PP + G
Sbjct: 260 PPGPPGPIGPPGQPGAPGSSQPGPQ-GPPGDPGIDGAPGNPGSPGEPGPPGQPG 312


>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 183 EDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAEAPK 353
           E++S   L    K TI   +      L  +  K  FG ++D FN  + NL+ ++  K
Sbjct: 125 EEDSQILLLRLLKTTISS-KSNYHHRLVLDECKVGFGMLIDDFNNGFNNLEKSDVRK 180


>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 183 EDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAEAPK 353
           E++S   L    K TI   +      L  +  K  FG ++D FN  + NL+ ++  K
Sbjct: 125 EEDSQILLLRLLKTTISS-KSNYHHRLVLDECKVGFGMLIDDFNNGFNNLEKSDVRK 180


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/51 (29%), Positives = 16/51 (31%)
 Frame = -3

Query: 891 WGGXGXPXXPXRXGAGXXGXXWGGEXXGXXXQKREXXGFXGGGXGXFXXGG 739
           WG  G        G G  G  WGG   G          + G G G    GG
Sbjct: 43  WGRPGWGGGGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGG 93


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/53 (35%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
 Frame = -3

Query: 894 RWGGXGXPXXPXRXGAGXXGXXWGGEXXGXXXQKREXXGFXGG-GXGXFXXGG 739
           RWGG G P      G G  G   GG   G         G  GG G G    GG
Sbjct: 39  RWGGGGGPGGWGNNGGGGWGRG-GGRGGGDWGGNNGGGGNWGGNGGGRGDWGG 90


>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
 Frame = -3

Query: 891 WGGX-GXPXXPXRXGAGXXGXXWGGEXXGXXXQKREXXGFXGGGXGXFXXGG 739
           WGG  G      + G G  G   GGE  G   Q     G  GG  G +   G
Sbjct: 182 WGGQNGGGQGGNQGGGGGRGGNQGGEQGGWGGQGGSQGGSQGGSQGGWGNQG 233


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/51 (29%), Positives = 19/51 (37%)
 Frame = -3

Query: 891 WGGXGXPXXPXRXGAGXXGXXWGGEXXGXXXQKREXXGFXGGGXGXFXXGG 739
           +GG G        G    G   GG+  G         G+ GGG G +  GG
Sbjct: 137 YGGMGGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGG 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,140,110
Number of Sequences: 27780
Number of extensions: 324099
Number of successful extensions: 1195
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2510937120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)