Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A21
         (811 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    29   5.2  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    29   5.2  
Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    28   9.1  
AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical ...    28   9.1  

>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 594 RKVPYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPFPSP 719
           + +P  +  H  KP+   +  P P  + K +P+   +P P P
Sbjct: 215 KPMPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPKP 256



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/59 (27%), Positives = 22/59 (37%)
 Frame = +3

Query: 603 PYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPFPSPTLSRKRSXFQ*NTXFXVPXP 779
           P  +  H  KP+   +  P P  + K +P+    P P P    K   F     F  P P
Sbjct: 184 PKPMPKHKPKPFPKPMLFPKPMPIPKPMPF--PKPMPKPMPKHKPKPFPKPMLFPKPMP 240



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/59 (27%), Positives = 22/59 (37%)
 Frame = +3

Query: 603 PYEVKVHVDKPYEVKVKVPTPYTVEKKIPYEVKVPFPSPTLSRKRSXFQ*NTXFXVPXP 779
           P+   +   KP  +   +P P  + K +P     PFP P L  K         F  P P
Sbjct: 194 PFPKPMLFPKPMPIPKPMPFPKPMPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMP 252


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 633 PYEVKVKVPTPYTVEKKIPYEVKVPFPSPT 722
           P  V   VP P  V+  +P  V VP P PT
Sbjct: 149 PQPVIQHVPVPVPVQVPVPIRVPVPVPVPT 178


>Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical
           protein R08D7.6c protein.
          Length = 856

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -3

Query: 752 SLEXGPFSRQCRAGERHFHFVRDFLLNGVGSGHFDFDFVRLVNVDLDFIRYFPFNGVRFR 573
           S+     ++Q        H V +F + G  +   + D +RLVN  L   RYF  N   F 
Sbjct: 308 SIAHAILAKQIEEVRTRIHMVEEFKIQGEDAVIEEVDIMRLVNDPLRDWRYFSQNFADFS 367

Query: 572 Y 570
           +
Sbjct: 368 F 368


>Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical
           protein R08D7.6b protein.
          Length = 734

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -3

Query: 752 SLEXGPFSRQCRAGERHFHFVRDFLLNGVGSGHFDFDFVRLVNVDLDFIRYFPFNGVRFR 573
           S+     ++Q        H V +F + G  +   + D +RLVN  L   RYF  N   F 
Sbjct: 311 SIAHAILAKQIEEVRTRIHMVEEFKIQGEDAVIEEVDIMRLVNDPLRDWRYFSQNFADFS 370

Query: 572 Y 570
           +
Sbjct: 371 F 371


>Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical
           protein R08D7.6a protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -3

Query: 752 SLEXGPFSRQCRAGERHFHFVRDFLLNGVGSGHFDFDFVRLVNVDLDFIRYFPFNGVRFR 573
           S+     ++Q        H V +F + G  +   + D +RLVN  L   RYF  N   F 
Sbjct: 311 SIAHAILAKQIEEVRTRIHMVEEFKIQGEDAVIEEVDIMRLVNDPLRDWRYFSQNFADFS 370

Query: 572 Y 570
           +
Sbjct: 371 F 371


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = -2

Query: 201 SLHRYLRNYVLHKILCHRCPFCLVSSLRLPSVCLSPPWQRQPRPTMPPK*PCTSLWXP 28
           S H     Y   +  C  CP  +    R+P  C +P     P P  PP  PC + + P
Sbjct: 12  SFHFAFAQYPFGRGGCGGCPTPMCQP-RMP--CAAPMPMPMPMPVCPPPPPCPAQFCP 66


>AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical
           protein Y95B8A.7 protein.
          Length = 608

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 430 RIQSRNTSPIPSRRKYPMR*KCPYLSP-TPSKRKFPLPSRNTSNTQYTYLN 579
           R Q +  + +P+  + P   K P+ +P  P  R+F +    T N +Y  LN
Sbjct: 221 RSQEKRKNQLPAVHEPPSFMKTPWFAPPAPEGREFNIVDDRTINEKYAGLN 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,833,131
Number of Sequences: 27780
Number of extensions: 284317
Number of successful extensions: 1008
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)