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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A18
         (850 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical pr...   135   4e-32
U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box...    89   5e-18
U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box...    85   8e-17
Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical pr...    84   1e-16
AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical ...    84   1e-16
Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical pr...    56   4e-08
Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical pr...    56   4e-08
U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.       56   4e-08
U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.       56   4e-08
AF043694-3|AAC24285.3|  220|Caenorhabditis elegans Hypothetical ...    28   9.6  

>Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical
           protein F33A8.3 protein.
          Length = 208

 Score =  135 bits (326), Expect = 4e-32
 Identities = 62/89 (69%), Positives = 69/89 (77%)
 Frame = +1

Query: 202 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 381
           V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAI  NNP K +RS+GD E V F +
Sbjct: 16  VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75

Query: 382 VAGEKGFEAAGVTGPGGEPVKGSPYAADK 468
           V G KG EAA VTGP G PV+GS YAAD+
Sbjct: 76  VEGSKGLEAASVTGPDGGPVQGSKYAADR 104


>U88173-8|AAK21380.1|  267|Caenorhabditis elegans C.elegans y-box
           protein 2 protein.
          Length = 267

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 44/85 (51%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
 Frame = +1

Query: 205 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFAV 381
           I   + G VKW++V   YGFI+RND ++D+FVHQTAIA++   K  +R++GD E V F +
Sbjct: 62  ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121

Query: 382 VAGEKGFEAAGVTGPGGEPVKGSPY 456
           V G+ G EAA VTGP G+ V GS Y
Sbjct: 122 VEGKNGPEAANVTGPNGDNVIGSRY 146


>U80450-3|AAB37828.1|  265|Caenorhabditis elegans C.elegans y-box
           protein 3 protein.
          Length = 265

 Score = 84.6 bits (200), Expect = 8e-17
 Identities = 42/86 (48%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
 Frame = +1

Query: 202 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFA 378
           V+   + G VKW++V   YGFI+R+D ++DVFVHQTAI++++  K  +R++ D E V F 
Sbjct: 59  VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFD 118

Query: 379 VVAGEKGFEAAGVTGPGGEPVKGSPY 456
           +V G+ G EAA VTGP G  V GS Y
Sbjct: 119 LVDGKNGPEAANVTGPAGVNVSGSKY 144


>Z73424-7|CAA97783.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 46/90 (51%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
 Frame = +1

Query: 202 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAV 369
           VI   V G VKWF+V+  YGF+ R+   D  ED FVHQTAI +++  K  +R++ D E V
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143

Query: 370 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 459
            F +V G KG EAA VTGP GE V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173


>AL023839-3|CAA19509.1|  294|Caenorhabditis elegans Hypothetical
           protein Y39A1C.3 protein.
          Length = 294

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 46/90 (51%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
 Frame = +1

Query: 202 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAV 369
           VI   V G VKWF+V+  YGF+ R+   D  ED FVHQTAI +++  K  +R++ D E V
Sbjct: 84  VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143

Query: 370 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 459
            F +V G KG EAA VTGP GE V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173


>Z81494-3|CAB61009.1|  196|Caenorhabditis elegans Hypothetical
           protein F02E9.2b protein.
          Length = 196

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
 Frame = +1

Query: 223 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 396
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 24  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 79

Query: 397 GFEAAGVTGP-GGEPVKGS 450
           G EA  V+G   G+ +KGS
Sbjct: 80  GREAYAVSGEVEGQGLKGS 98


>Z81494-2|CAB61008.1|  227|Caenorhabditis elegans Hypothetical
           protein F02E9.2a protein.
          Length = 227

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
 Frame = +1

Query: 223 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 396
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 397 GFEAAGVTGP-GGEPVKGS 450
           G EA  V+G   G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129


>U75915-1|AAB49759.1|  227|Caenorhabditis elegans Lin-28 protein.
          Length = 227

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
 Frame = +1

Query: 223 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 396
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 397 GFEAAGVTGP-GGEPVKGS 450
           G EA  V+G   G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129


>U75912-1|AAC47476.1|  227|Caenorhabditis elegans LIN-28 protein.
          Length = 227

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
 Frame = +1

Query: 223 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 396
           G+ KWFNV  GYGF+  + T ED+FVHQ+    N   +  RS+ +GE V + +   +  K
Sbjct: 55  GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110

Query: 397 GFEAAGVTGP-GGEPVKGS 450
           G EA  V+G   G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129


>AF043694-3|AAC24285.3|  220|Caenorhabditis elegans Hypothetical
           protein C45E1.4 protein.
          Length = 220

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 480 PPPIFPSFKVADEA--VKELHAEED*DVV 560
           PPP+F  F   DE   V++ H+E D D V
Sbjct: 95  PPPVFDEFLTEDETEKVQKAHSERDVDSV 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,093,558
Number of Sequences: 27780
Number of extensions: 258853
Number of successful extensions: 836
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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