Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_FL5_A02
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   217   8e-57
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiestera...    31   1.1  
U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiestera...    31   1.1  
U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiestera...    31   1.1  
U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiestera...    31   1.1  
U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiestera...    31   1.1  
U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiestera...    31   1.1  
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  217 bits (530), Expect = 8e-57
 Identities = 106/206 (51%), Positives = 129/206 (62%)
 Frame = +2

Query: 182 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 361
           VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGGTHR
Sbjct: 26  VFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHR 85

Query: 362 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 541
           SGQGAFGNMCRGG MFAP K +RRWH                         QARGH+I++
Sbjct: 86  SGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQ 145

Query: 542 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQXXXXXXXXXXXXXXXXXXX 721
           + E+PLVV+DKV+   KTK+AV+FLRR   W+DI KVY S+                   
Sbjct: 146 VAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLG 205

Query: 722 PLIIXXXDQGLTRAFRNIPGVXXLNV 799
           P++I   D    RAFRNIPGV  +NV
Sbjct: 206 PVVIYGQDAECARAFRNIPGVDVMNV 231


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +2

Query: 242 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 412
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 413 PTKP 424
             KP
Sbjct: 197 APKP 200


>U28729-6|AAA68292.1|  549|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforma protein.
          Length = 549

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 85  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 210
           SS+    V++ L++ Y +K E        +P  +QG  TSGP
Sbjct: 131 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 172


>U28729-5|AAO38607.1|  674|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformd protein.
          Length = 674

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 85  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 210
           SS+    V++ L++ Y +K E        +P  +QG  TSGP
Sbjct: 256 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 297


>U28729-4|AAN60496.1|  599|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformc protein.
          Length = 599

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 85  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 210
           SS+    V++ L++ Y +K E        +P  +QG  TSGP
Sbjct: 181 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 222


>U28729-3|AAO38608.1|  612|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoforme protein.
          Length = 612

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 85  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 210
           SS+    V++ L++ Y +K E        +P  +QG  TSGP
Sbjct: 194 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 235


>U28729-2|AAK77625.1|  626|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformb protein.
          Length = 626

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 85  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 210
           SS+    V++ L++ Y +K E        +P  +QG  TSGP
Sbjct: 208 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 249


>U28729-1|ABB88209.1|  673|Caenorhabditis elegans Phosphodiesterase
           protein 4, isoformg protein.
          Length = 673

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 85  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPXRIQGAHTSGP 210
           SS+    V++ L++ Y +K E        +P  +QG  TSGP
Sbjct: 255 SSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPSTSGP 296


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -2

Query: 712 LDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 560
           L+  +VA   L  TKT+RL+ +  IRP      + + L  + + L+ +GYN
Sbjct: 265 LNIESVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 568 GYNQGKLGNL-FNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAP 428
           GY  G + N+  N VS+ + + ++AS+S G   G S  +E+D   P P
Sbjct: 614 GYT-GCIKNIRMNGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,856,763
Number of Sequences: 27780
Number of extensions: 372092
Number of successful extensions: 1181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)