Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_A08
(857 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-10|CAE17898.2| 366|Caenorhabditis elegans Hypothetical p... 31 0.79
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 31 1.4
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 31 1.4
AC017117-3|AAF16619.1| 339|Caenorhabditis elegans Hypothetical ... 31 1.4
U49947-6|AAA93424.1| 85|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z82089-1|CAB05002.1| 983|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z81511-2|CAB04167.1| 983|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical pr... 28 7.4
U41031-2|AAA82619.2| 615|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z82074-1|CAB04928.2| 480|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 9.8
AL713992-2|CAD29326.2| 317|Caenorhabditis elegans Hypothetical ... 28 9.8
AL132864-6|CAB63395.1| 480|Caenorhabditis elegans Hypothetical ... 28 9.8
AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical... 28 9.8
AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical ... 28 9.8
AC006610-1|AAK85447.4| 360|Caenorhabditis elegans Hypothetical ... 28 9.8
>Z46381-10|CAE17898.2| 366|Caenorhabditis elegans Hypothetical
protein M01F1.9 protein.
Length = 366
Score = 31.5 bits (68), Expect = 0.79
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -1
Query: 188 IR*ALKISNLCWGLRGALEML-FRALLILCSNVTHPEASKSTPRYRHRST 42
IR + +SNL G +G +E L + +L ++C +S STP R R T
Sbjct: 21 IRITVTVSNLSRGKQGVVEQLAWGSLQLICERTIGATSSNSTPSSRPRPT 70
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 389 GVSGGSTRHHGQWQEPPPNLIRFVRNCGGPGNSSAG 496
G GGS + H Q Q+ P I+++ G GN+ G
Sbjct: 2124 GGGGGSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGG 2159
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 389 GVSGGSTRHHGQWQEPPPNLIRFVRNCGGPGNSSAG 496
G GGS + H Q Q+ P I+++ G GN+ G
Sbjct: 2124 GGGGGSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGG 2159
>AC017117-3|AAF16619.1| 339|Caenorhabditis elegans Hypothetical
protein F43C11.9 protein.
Length = 339
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -2
Query: 754 KQPXQRAGRRHQSRAQLRKVSAEVPPTIQFEAEVPKTGHPDPDADASDHEVGTQRRRSSR 575
+QP + S +QL SA PP+ + ++G P DAD+S EV ++R+
Sbjct: 226 RQPESKPSNEASS-SQLEPTSASQPPSRVDQILKSRSGLPTKDADSSS-EVAPRKRKPKS 283
Query: 574 P 572
P
Sbjct: 284 P 284
>U49947-6|AAA93424.1| 85|Caenorhabditis elegans Hypothetical
protein C30G4.5 protein.
Length = 85
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 706 LRKVSAEVPPTIQFEAEVPKTGHPDPD 626
LRKV+ + PPTI E E PK + PD
Sbjct: 9 LRKVNEQQPPTIIEEDETPKRANRPPD 35
>Z82089-1|CAB05002.1| 983|Caenorhabditis elegans Hypothetical
protein ZK270.1 protein.
Length = 983
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 268 AVGQWLRLPADVPKAYYHAAVQDGGLAIPSVR 363
++G + +PA V YY A++Q+G ++ PS R
Sbjct: 843 SIGFSVDIPAHVSYHYYQASIQEGPMSPPSSR 874
>Z81511-2|CAB04167.1| 983|Caenorhabditis elegans Hypothetical
protein ZK270.1 protein.
Length = 983
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 268 AVGQWLRLPADVPKAYYHAAVQDGGLAIPSVR 363
++G + +PA V YY A++Q+G ++ PS R
Sbjct: 843 SIGFSVDIPAHVSYHYYQASIQEGPMSPPSSR 874
>Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical
protein C35A5.8 protein.
Length = 1078
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 130 ISRAPLKPQQRLEILRAHLIPRFQHGFVFGNIS 228
I+R PLK RLE+ H++ +F+ ++ I+
Sbjct: 523 IARFPLKGNLRLEVSFIHMLEQFRRAYIMDQIT 555
>U41031-2|AAA82619.2| 615|Caenorhabditis elegans Hypothetical
protein C16B8.2 protein.
Length = 615
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = -2
Query: 718 SRAQLRKVSAEVPPTIQFEAEVP---KTGHPDPDADASDHE 605
S++ ++K+ E+PPT+ P KT P+PD DAS+ E
Sbjct: 359 SQSHIKKIHLEMPPTLLPHRRKPKKMKTTTPNPD-DASEVE 398
>Z82074-1|CAB04928.2| 480|Caenorhabditis elegans Hypothetical
protein W06H12.1 protein.
Length = 480
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 302 TSAGSLSHCPTAFRIWTSSILNRSSEMFPNTKP 204
TS G LS C + T+++ +RSSE P KP
Sbjct: 84 TSVGLLSDCHDSATSTTTTVSHRSSEEPPRRKP 116
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 813 PXHPPIRGGAPPDRDPPTFGSSRXKEPAVAISRGP 709
P PP+ GG PP PP FG+ P + P
Sbjct: 95 PPPPPMMGGIPP--PPPMFGAPPPPPPPSGLGVAP 127
>AL713992-2|CAD29326.2| 317|Caenorhabditis elegans Hypothetical
protein VY10G11R.1 protein.
Length = 317
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 464 NCGGPGNSSAGSAVVTRIRRLG-PKVALDKTQ 556
NCGG SA S V T +LG PK D+T+
Sbjct: 2 NCGGKKKKSANSPVGTNKSKLGAPKEKKDETE 33
>AL132864-6|CAB63395.1| 480|Caenorhabditis elegans Hypothetical
protein W06H12.1 protein.
Length = 480
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 302 TSAGSLSHCPTAFRIWTSSILNRSSEMFPNTKP 204
TS G LS C + T+++ +RSSE P KP
Sbjct: 84 TSVGLLSDCHDSATSTTTTVSHRSSEEPPRRKP 116
>AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical
protein T08B2.5d protein.
Length = 163
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 340 GLAIPSVRATIPDLIVRRFGGLDSSPW-SVARAAAKSDKIRKKLRWAWKQLRRFSRRHKD 516
G I + AT P++ + R G SS S AR A +S + R + R SRR
Sbjct: 83 GFPIMTTPATQPEISIPRSGENKSSRSPSWAREARRSRSRSRDRRGGRSRSRSPSRRRTS 142
Query: 517 PTAGTEGGARQNPGPVVSR 573
+ +R+ GP++++
Sbjct: 143 RDRRDDRSSRRRRGPIINQ 161
>AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical
protein T08B2.5e protein.
Length = 184
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 340 GLAIPSVRATIPDLIVRRFGGLDSSPW-SVARAAAKSDKIRKKLRWAWKQLRRFSRRHKD 516
G I + AT P++ + R G SS S AR A +S + R + R SRR
Sbjct: 104 GFPIMTTPATQPEISIPRSGENKSSRSPSWAREARRSRSRSRDRRGGRSRSRSPSRRRTS 163
Query: 517 PTAGTEGGARQNPGPVVSR 573
+ +R+ GP++++
Sbjct: 164 RDRRDDRSSRRRRGPIINQ 182
>AC006610-1|AAK85447.4| 360|Caenorhabditis elegans Hypothetical
protein C30F12.1 protein.
Length = 360
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -1
Query: 773 GTPRRLEAAGSKSRPSPSVEGPTSQSERGSSTDH-PVR 663
G P +GS++ P P + S S SS+ H P+R
Sbjct: 162 GKPENSGKSGSRNSPEPIMTSSASSSSASSSSSHRPIR 199
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,668,650
Number of Sequences: 27780
Number of extensions: 469258
Number of successful extensions: 1423
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -