Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A01
         (1053 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    26   2.4  
Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr...    29   5.6  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    29   7.3  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   7.3  

>Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical
           protein Y48E1B.1 protein.
          Length = 497

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 61  LXPVXXXPXXPPPXXPPPPP 2
           + P+   P  PPP  PPPPP
Sbjct: 348 IPPIISPPAPPPPPPPPPPP 367


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
          related) protein 4 protein.
          Length = 210

 Score = 25.8 bits (54), Expect(2) = 2.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 31 PPPXXPPPPP 2
          PPP  PPPPP
Sbjct: 58 PPPMCPPPPP 67



 Score = 23.0 bits (47), Expect(2) = 2.4
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -3

Query: 55 PVXXXPXXPPPXXPPPP 5
          P    P  PP   PPPP
Sbjct: 44 PCPPPPICPPQFCPPPP 60


>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
           protein K02E2.2 protein.
          Length = 1021

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 55  PVXXXPXXPPPXXPPPPP 2
           P    P  PPP  PPPPP
Sbjct: 779 PFFALPVPPPPPVPPPPP 796


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 61  LXPVXXXPXXPPPXXPPPPP 2
           L P+      PPP  PPPPP
Sbjct: 502 LPPIATPSSVPPPPPPPPPP 521


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 88   AXHVRTKXFLXPVXXXPXXPPPXXPPPPP 2
            A H  +  F       P  PPP  PPPPP
Sbjct: 1320 ANHEDSDSFSTSRSSSPSPPPPPPPPPPP 1348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,760,513
Number of Sequences: 27780
Number of extensions: 309600
Number of successful extensions: 2802
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1888
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2803879784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)