Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40019
(842 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase p... 208 5e-56
AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase p... 208 5e-56
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 23 3.5
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 23 4.7
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 8.1
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 8.1
>AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 208 bits (508), Expect = 5e-56
Identities = 94/113 (83%), Positives = 103/113 (91%)
Frame = +2
Query: 2 IYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRA 181
IYRA+YFGFYDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRA
Sbjct: 188 IYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRA 247
Query: 182 KSDILYKNTIHCWATIAKTEGTSGLFKGAFSNVLRGTGGAFVLVLYDEIKKVL 340
KS+ILYK+T+HCWATI KTEG + FKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 248 KSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300
Score = 32.7 bits (71), Expect = 0.004
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 131 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSGLFKG 265
YP D R R+ G+A + + +C I K +G +GL++G
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178
Score = 29.9 bits (64), Expect = 0.031
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 89 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSGLFK 262
A A + TTVA P + V+ + +Q S + + YK I C+ I K +G ++
Sbjct: 20 AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74
Query: 263 GAFSNVLR 286
G +NV+R
Sbjct: 75 GNLANVIR 82
>AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 208 bits (508), Expect = 5e-56
Identities = 94/113 (83%), Positives = 103/113 (91%)
Frame = +2
Query: 2 IYRASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRA 181
IYRA+YFGFYDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRA
Sbjct: 188 IYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRA 247
Query: 182 KSDILYKNTIHCWATIAKTEGTSGLFKGAFSNVLRGTGGAFVLVLYDEIKKVL 340
KS+ILYK+T+HCWATI KTEG + FKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 248 KSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300
Score = 32.7 bits (71), Expect = 0.004
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 131 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSGLFKG 265
YP D R R+ G+A + + +C I K +G +GL++G
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178
Score = 29.9 bits (64), Expect = 0.031
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 89 AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSGLFK 262
A A + TTVA P + V+ + +Q S + + YK I C+ I K +G ++
Sbjct: 20 AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74
Query: 263 GAFSNVLR 286
G +NV+R
Sbjct: 75 GNLANVIR 82
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 23.0 bits (47), Expect = 3.5
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +3
Query: 501 VLQIACPN*SDILPL*KFSNFDISIAFILYN 593
+L+++ P D+ + K+S ++F+L+N
Sbjct: 450 ILRVSMPKIKDVNIIDKYSRIIFPVSFMLFN 480
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 22.6 bits (46), Expect = 4.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 330 LISSYKTSTKAPPVPLRTLEKAPL 259
L++++KT T+ P + LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.8 bits (44), Expect = 8.1
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 379 DSVSQPLPSDHVLLDTKTTLVTYF*LNKVLYNDSIIYCFI-KCYKLL 516
D+V+Q S + L L +Y N +Y D++I C + C +L
Sbjct: 282 DAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCTVNSCTSML 328
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.8 bits (44), Expect = 8.1
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 379 DSVSQPLPSDHVLLDTKTTLVTYF*LNKVLYNDSIIYCFI-KCYKLL 516
D+V+Q S + L L +Y N +Y D++I C + C +L
Sbjct: 335 DAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCTVNSCTSML 381
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,368
Number of Sequences: 438
Number of extensions: 4235
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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