Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40015
         (826 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    94   2e-21
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    43   3e-06
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    43   4e-06
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   4.5  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   7.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   7.9  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 93.9 bits (223), Expect = 2e-21
 Identities = 41/70 (58%), Positives = 56/70 (80%)
 Frame = +1

Query: 46  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 225
           +F+GK+YK+ SSENFD+FMK +GVG++TRK  ++V+P VEL ++   Y L T+S FK TE
Sbjct: 3   DFLGKRYKLYSSENFDDFMKALGVGIMTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTE 62

Query: 226 MKFKPGEEFE 255
           +KFK GEEFE
Sbjct: 63  IKFKLGEEFE 72



 Score = 70.5 bits (165), Expect = 2e-14
 Identities = 34/61 (55%), Positives = 40/61 (65%)
 Frame = +3

Query: 255 EDRADGAKVKSVCTFEGNTLKQVQKAPDGIEVTYVREFGPEEMKAVMTAKDVTCTRVYKV 434
           E+  DG KVKSVCT +GN L QVQK     + T  REF   EMKA+M   D+ CTRVYK+
Sbjct: 73  EETVDGRKVKSVCTLDGNKLIQVQKGEK--QTTIEREFSSTEMKAIMKVDDIICTRVYKI 130

Query: 435 Q 437
           Q
Sbjct: 131 Q 131


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 43.2 bits (97), Expect = 3e-06
 Identities = 25/73 (34%), Positives = 36/73 (49%)
 Frame = +1

Query: 43  MEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTT 222
           ++F GK ++  S  NF+EF K +G   +         P+ EL K+GDE+   +SS   T 
Sbjct: 2   VQFEGK-FQFVSQNNFEEFAKVLGDQNLVNTVLQP-RPSFELSKNGDEWTFTSSSGDNTY 59

Query: 223 EMKFKPGEEFERT 261
              FK    FE T
Sbjct: 60  TKTFKMNVPFEET 72


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 42.7 bits (96), Expect = 4e-06
 Identities = 25/72 (34%), Positives = 35/72 (48%)
 Frame = +1

Query: 46  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 225
           +F GK ++  S  NF+EF K +G   +         P+ EL K+GDE+   +SS   T  
Sbjct: 1   QFEGK-FQFVSQNNFEEFAKVLGDQNLVNTVLQP-RPSFELSKNGDEWTFTSSSGDNTYT 58

Query: 226 MKFKPGEEFERT 261
             FK    FE T
Sbjct: 59  KTFKMNVPFEET 70


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 460 RESVPPIHEHPAAQLCYLASILYIS 534
           RES+PP  + P   L Y  SI  ++
Sbjct: 263 RESLPPTEKTPLISLYYGVSICLVT 287


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 230 FISVVLKVEEVTKLYSSPSLRSSTV 156
           FIS+++  +E+  + +SP L + T+
Sbjct: 9   FISLIILNDEIYNIIASPQLNNPTL 33


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/48 (20%), Positives = 24/48 (50%)
 Frame = +3

Query: 306 NTLKQVQKAPDGIEVTYVREFGPEEMKAVMTAKDVTCTRVYKVQ*KDS 449
           + +K +  +PD +E     ++  E  +  +  KDV+   ++ +Q  D+
Sbjct: 184 SNIKVISISPDLVETDMTAQWLKENSRLALKPKDVSNCVLFALQTPDN 231


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 713 PMKRIF*ITNXNFAHKRPTRCYRG 642
           P+KR+   TN N   K P+R   G
Sbjct: 141 PIKRVKDSTNCNCGWKNPSRIVGG 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,986
Number of Sequences: 438
Number of extensions: 4477
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)