Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40011
         (360 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   1.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   3.3  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              20   7.7  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              20   7.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   7.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 232  RNTFHLSRQNRSEDSRRGCDQSHRSPTRQEGAPRIPQ 342
            R++  L R +R  +   G  Q  R       AP+ PQ
Sbjct: 1415 RDSTKLDRSSREREVHNGGQQEDRDRKTLTSAPQQPQ 1451


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +1

Query: 79  SAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLP 222
           +A+ S PPP F  +  +  + S ++++ R  +   +  +A   M  +P
Sbjct: 374 TALMSQPPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIP 421


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 145 LKCFGSLKLPSEIL 104
           +KCFG  K   E+L
Sbjct: 120 VKCFGKYKTMKEVL 133


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 145 LKCFGSLKLPSEIL 104
           +KCFG  K   E+L
Sbjct: 120 VKCFGKYKTMKEVL 133


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +2

Query: 215 LCHKKREIRSI*AGKTDQKTVD 280
           LC K++E+  I    + ++T+D
Sbjct: 80  LCEKRKEVSIITEDSSRKQTID 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,750
Number of Sequences: 438
Number of extensions: 1852
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)