Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10416
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    75   7e-16
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   5.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.5  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 74.9 bits (176), Expect = 7e-16
 Identities = 32/72 (44%), Positives = 46/72 (63%)
 Frame = +2

Query: 38  CAWPRGKVLGGSSSINLMFYVRGNKADYDEWAADGNEGWSFEDVLPYFKKSESFMGKFDA 217
           C WPRGK LGG++  + M Y RG++ DY+ W   G  GWS+++V+PY+ KSE+   +   
Sbjct: 142 CYWPRGKNLGGTTLHHGMAYHRGHRKDYERWVQQGAFGWSWDEVMPYYLKSEN-NTELSR 200

Query: 218 EATKYHSKGGYL 253
             TKYH  GG +
Sbjct: 201 VGTKYHRSGGLM 212



 Score = 73.3 bits (172), Expect = 2e-15
 Identities = 35/68 (51%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
 Frame = +3

Query: 504 QQVSGVLLNKGGRDIAVNVRKEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLP- 680
           ++ +GV +   GR   +  R+EV++SAG++N+PQLL+LSGIGP++HL  L I V  DLP 
Sbjct: 295 KRATGVNVLINGRRRIIFARREVILSAGSVNTPQLLMLSGIGPKEHLRSLGIPVVVDLPG 354

Query: 681 VGENLQDH 704
           VGENL +H
Sbjct: 355 VGENLHNH 362



 Score = 58.4 bits (135), Expect = 7e-11
 Identities = 29/64 (45%), Positives = 40/64 (62%)
 Frame = +1

Query: 295 IIKAAVELGLKNLTDCNGDSQIGVMKSFTTTKGGTRFSTARAFLSPIKDRKNLHVIKNAI 474
           I+KAA E G     D +GD   G   + T ++ G R S+ARAF++P ++R NLHVI NA 
Sbjct: 227 ILKAAEEAGFGVSEDLSGDRINGFTVAQTISRNGVRLSSARAFITPFENRSNLHVIVNAT 286

Query: 475 ATKI 486
            TK+
Sbjct: 287 VTKV 290


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 131 PIRRNRPCYLERK 93
           P+ RNRP YL  K
Sbjct: 153 PMNRNRPAYLASK 165


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 283 IEDLIIKAAVELGLKNLTDCNGD 351
           ++D+    AVE G+   T C GD
Sbjct: 354 VQDISSPDAVEYGIIGPTTCMGD 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,505
Number of Sequences: 438
Number of extensions: 4549
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)