Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10388
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.0  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   3.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.1  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   8.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.1  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 5   WLRSTKPSRKSVFSGSSLTGELISISSLICPMSNSW 112
           W       RKS  S +SL   LI   ++ CP+  SW
Sbjct: 218 WKNDEGTLRKSP-SLTSLNAYLIKNQTITCPIKVSW 252


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 5   WLRSTKPSRKSVFSGSSLTGELISISSLICPMSNSW 112
           W       RKS  S +SL   LI   ++ CP+  SW
Sbjct: 218 WKNDEGTLRKSP-SLTSLNAYLIKNQTITCPIKVSW 252


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 5   WLRSTKPSRKSVFSGSSLTGELISISSLICPMSNSW 112
           W       RKS  S +SL   LI   ++ CP+  SW
Sbjct: 269 WKNDEGTLRKSP-SLTSLNAYLIKNQTITCPIKVSW 303


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 5   WLRSTKPSRKSVFSGSSLTGELISISSLICPMSNSW 112
           W       RKS  S +SL   LI   ++ CP+  SW
Sbjct: 218 WKNDEGTLRKSP-SLTSLNAYLIKNQTITCPIKVSW 252


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/35 (20%), Positives = 20/35 (57%)
 Frame = -2

Query: 503 IVISCKFCVTLSLEVVLDALLERNEP*AVCSTDTG 399
           IV+   FC+ ++   + +  ++ ++   +C T++G
Sbjct: 4   IVVIFAFCICVNAMTIEELKIQLHDVQEICKTESG 38


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 406  SVLHTAQGSFRSSRASKTTSRLSVTQNLHEITIK 507
            SVLH+AQ    SS ++ T    ++T  L  + ++
Sbjct: 940  SVLHSAQSVVASSASNVTNVTTNLTTILPPVKVQ 973


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 383 CKAR*TRYRCYTQLKVHS 436
           CKA    + C  QLKVH+
Sbjct: 206 CKACGKGFTCSKQLKVHT 223


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 503 IVISCKFCVTLSLEVVLDALLERNEP*AVCSTDTG 399
           IV+   FCV +    + +     +   +VC T+TG
Sbjct: 4   IVLIFGFCVCVGALTIEELKTRLHTEQSVCKTETG 38


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 467 LEVVLDALLERNEP*AVCSTDTGSTVLYRL 378
           L V+++ LL       VC   T ++ LYRL
Sbjct: 11  LFVIINVLLHGQVICFVCKDITSTSALYRL 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,299
Number of Sequences: 438
Number of extensions: 2435
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)