Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0204.Seq
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   2.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   7.6  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 425 CS-RCLQMINENNKIEIDKQAFHSHCAKCIFATRF 526
           CS  C+     N+ ++     +   CA C +AT++
Sbjct: 22  CSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKY 56


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 327 WAQFVWTDGHSPLNRSSTCCLKHPCRIRARRTSSPPTELF 208
           W   +WTD H   N S    ++   R+   R   P T L+
Sbjct: 57  WVTQIWTDHHLKWNASEFAGIR-VIRVPYNRVWRPDTILY 95


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/49 (22%), Positives = 23/49 (46%)
 Frame = +2

Query: 389 SEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCIFATRFHRP 535
           S +S GN   ++  +    +N N+ ++    + HSH +  +  +  H P
Sbjct: 256 STSSGGNEDANLLLKA--RLNPNSSLQPSLASHHSHLSSALGRSACHSP 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,562
Number of Sequences: 438
Number of extensions: 4346
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)