Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0096.Seq
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.54 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.94 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.6  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   6.6  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   6.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -2

Query: 328 PAMFP-VLWTMPPFWKP*CPPCAPSRLDPDR--APRAPHGGHLLGPS 197
           P ++P     +PP + P      PS+  P R  +P   HG H +GP+
Sbjct: 302 PGVYPSTAGFLPPSYHP--HQHHPSQYHPHRGSSPHHQHGNHTMGPT 346


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = +3

Query: 51  HQNQHFQNVYLETFTNAHTPYSTSLARRSTGGTLRYGGAPATRRHAPTGLGP 206
           H   H  + +  T    H  +ST LA  S    ++ G  P    H P   GP
Sbjct: 427 HATPHHHHSHAAT---PHHQHSTPLAHSSYPAAIQIGHTPHHHPHPPETPGP 475


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 240  VRPVRPTAVICLVPALWAHAAV 175
            V+P     V+ LVPA W H  V
Sbjct: 1513 VKPGGNFVVLDLVPATWYHLRV 1534


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 283 ASKTGAWSTARGTLPDXR 336
           A+  G + TARG LPD +
Sbjct: 191 AAYFGFYDTARGMLPDPK 208


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 283 ASKTGAWSTARGTLPDXR 336
           A+  G + TARG LPD +
Sbjct: 191 AAYFGFYDTARGMLPDPK 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,901
Number of Sequences: 438
Number of extensions: 3103
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)