Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0004.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.91 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.91 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.7  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 396 LTYGQXNHVGLAL 358
           LTYGQ NH+ L L
Sbjct: 64  LTYGQTNHISLTL 76


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 396 LTYGQXNHVGLAL 358
           LTYGQ NH+ L L
Sbjct: 102 LTYGQTNHISLTL 114


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -1

Query: 536  GELDEXRXQDLLXRNSLKGPVPXNLLEAVLAEHNGXGGTTWXP 408
            G LDE +       + LKG +  N  +  L  HN  G +   P
Sbjct: 1446 GNLDELQLSRHATSHELKGLLCGNTYQLYLTSHNKIGSSPSSP 1488


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -1

Query: 536  GELDEXRXQDLLXRNSLKGPVPXNLLEAVLAEHNGXGGTTWXP 408
            G LDE +       + LKG +  N  +  L  HN  G +   P
Sbjct: 1442 GNLDELQLSRHATSHELKGLLCGNTYQLYLTSHNKIGSSPSSP 1484


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 114 VDPTSVAVPVIGGHSGITII 173
           + PTS+A+P++G +   T+I
Sbjct: 302 IPPTSLAIPLLGKYLLFTMI 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,707
Number of Sequences: 438
Number of extensions: 2100
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)