Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C10f
         (388 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   1.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   6.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   8.6  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    20   8.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   8.6  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 98  WLIFDATFSLQSGKHSCENNSGFIFHLISPVRY 196
           W+ FD   S  S  + C  +     H+  P+RY
Sbjct: 101 WIAFDVMCSTASILNLCAISLDRYIHIKDPLRY 133


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 100 AYFRCDFFFTVWKTLVRK*FR 162
           A++  DF    W+   RK F+
Sbjct: 360 AFYSADFRLAFWRLTCRKCFK 380


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 29  WMIRCFDAFNRLRYYVCKIEMLPWLIFDAT 118
           W I    A     +Y+C  E  P ++F+ T
Sbjct: 202 WDIIKVPAVRNEAFYICCEEPYPDIVFNIT 231


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +1

Query: 52  IQQVEVLRMQNR 87
           ++++EVL MQNR
Sbjct: 81  VKELEVLMMQNR 92


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +2

Query: 110 DATFSLQSGKHSCENNSGF 166
           D       G HSCE   GF
Sbjct: 72  DKASGFHYGVHSCEGCKGF 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,907
Number of Sequences: 438
Number of extensions: 1839
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)