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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0007.Seq
         (329 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   3.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   5.1  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    20   6.7  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    20   6.7  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    20   6.7  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    20   6.7  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    20   6.7  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    20   6.7  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    20   6.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   6.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   6.7  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    20   8.9  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 11/59 (18%), Positives = 24/59 (40%)
 Frame = +1

Query: 49  KYFSSNSKCQITLGPVPDPLLLNNYRLDIANSNITAQFNNVSVRGLNGNIXEFYFNRKT 225
           ++  +   C +    + +P  L NY   I  + +    ++V V  L   +  F  + +T
Sbjct: 187 RFLKNPRPCNVLATSLTEPYTLRNYGRRINCTYVALYPSSVQVIALGVGVSNFLSSTRT 245


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 14  DLVRTSTWTVFVNISRV 64
           +LVR +T+T  VN++RV
Sbjct: 630 NLVRPNTFTDKVNLTRV 646


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 25  NFDLDCIRKYFSSNSKCQITL 87
           N D+DCI +     +K Q  +
Sbjct: 479 NCDIDCINRVVQRGTKMQFCI 499


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 72  MSNNARASTGSAASQQLQIRYSKL*YYRPI 161
           +SNN + S  +  +      Y KL YY  I
Sbjct: 85  LSNNYKYSNYNNYNNNYNTNYKKLQYYNII 114


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 72  MSNNARASTGSAASQQLQIRYSKL*YYRPI 161
           +SNN + S  +  +      Y KL YY  I
Sbjct: 85  LSNNYKYSNYNNYNNNYNTNYKKLQYYNII 114


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 72  MSNNARASTGSAASQQLQIRYSKL*YYRPI 161
           +SNN + S  +  +      Y KL YY  I
Sbjct: 85  LSNNYKYSNYNNYNNNYNTNYKKLQYYNII 114


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 72  MSNNARASTGSAASQQLQIRYSKL*YYRPI 161
           +SNN + S  +  +      Y KL YY  I
Sbjct: 85  LSNNYKYSNYNNYNNNYNTNYKKLQYYNII 114


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 72  MSNNARASTGSAASQQLQIRYSKL*YYRPI 161
           +SNN + S  +  +      Y KL YY  I
Sbjct: 85  LSNNYKYSNYNNYNNNYNTNYKKLQYYNII 114


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 72  MSNNARASTGSAASQQLQIRYSKL*YYRPI 161
           +SNN + S  +  +      Y KL YY  I
Sbjct: 85  LSNNYKYSNYNNYNNNYNTNYKKLQYYNII 114


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 72  MSNNARASTGSAASQQLQIRYSKL*YYRPI 161
           +SNN + S  +  +      Y KL YY  I
Sbjct: 85  LSNNYKYSNYNNYNNNYNTNYKKLQYYNII 114


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 209 TSTEKLRNWCWQQ 247
           T TE+L   CW Q
Sbjct: 150 TPTERLEALCWTQ 162


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 209 TSTEKLRNWCWQQ 247
           T TE+L   CW Q
Sbjct: 203 TPTERLEALCWTQ 215


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -2

Query: 67  NYSRNIYEYSPSRSSDKVFQR 5
           NY+ N Y+Y+ +  + K++ +
Sbjct: 323 NYNNNNYKYNYNNYNKKLYYK 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,908
Number of Sequences: 438
Number of extensions: 1640
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)

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