Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30038
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   5.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   5.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.8  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 188 EAESSGDQAGFIRHSACDPRRRSRPFPRE 274
           E    G   G+     CD R++  P PR+
Sbjct: 154 ELSQPGSLNGYGSSDGCDARKKKGPTPRQ 182


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 309 EELSXAIKDADVVVIPXGVPREPGMTR 389
           EEL  A    D+ +    +P EPGM +
Sbjct: 433 EELIWARGTKDIPISACSLPCEPGMIK 459


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 309 EELSXAIKDADVVVIPXGVPREPGMTR 389
           EEL  A    D+ +    +P EPGM +
Sbjct: 523 EELIWARGTKDIPISACSLPCEPGMIK 549


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +2

Query: 176 GPSTEAE-SSGDQAGFIRHSACDPRRRSRPFPREHPSQGQR 295
           GP++    ++G  +  +  S     +   P+P  HP  G +
Sbjct: 67  GPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSK 107


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +2

Query: 176 GPSTEAE-SSGDQAGFIRHSACDPRRRSRPFPREHPSQGQR 295
           GP++    ++G  +  +  S     +   P+P  HP  G +
Sbjct: 67  GPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSK 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,060
Number of Sequences: 438
Number of extensions: 3350
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)