Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30023
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   3.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   3.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.5  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 326 TWHERHLDISSEIFIHPFPHC 264
           T  E+HL I + +    FP C
Sbjct: 195 TREEKHLPIGASVLFEIFPFC 215


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 274 NG*MNISELISRCLSCHVRSNLSICHGQVCETKMES 381
           NG +  S  IS  LSC +   L     QVC  +M S
Sbjct: 145 NGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRMAS 180


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 274 NG*MNISELISRCLSCHVRSNLSICHGQVCETKMES 381
           NG +  S  IS  LSC +   L     QVC  +M S
Sbjct: 145 NGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRMAS 180


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 176 VRMSVNSKWRLPDVFCD 226
           V + VN  W LP   CD
Sbjct: 244 VYVLVNGSWSLPGFVCD 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,668
Number of Sequences: 438
Number of extensions: 3130
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)