Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30007
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.35 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   0.80 
AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    24   1.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.2  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   5.6  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   5.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 116 IFRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETKNPVEKSKN 250
           I  DY+A+LK +  E+   D   ++   +  V S+ +  ++K ++
Sbjct: 291 ICEDYQAFLKHLNTEHTLDDRSTAQARVRMQVVSQLEIQLQKERD 335


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 119 FRDYEA--YLKEIQEEYHGPDGDC 184
           FR +++  Y++ I+  YH P+ DC
Sbjct: 313 FRVFQSTQYIRHIKSPYHTPEPDC 336


>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 30

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 353 CNMLGDKPKGFSFGINT 403
           C + GDK  GF +G+++
Sbjct: 9   CRVCGDKASGFHYGVHS 25


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 353 CNMLGDKPKGFSFGINT 403
           C + GDK  GF +G+++
Sbjct: 67  CRVCGDKASGFHYGVHS 83


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 288 DTVRSLLDSEKIPFFDFSTG 229
           D   S +D E I F D STG
Sbjct: 804 DIYASSIDKENILFLDLSTG 823


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -2

Query: 427 NAIYSACSCIYTKRKSFWFV 368
           N IY+   C+       WFV
Sbjct: 124 NKIYNLAKCVQESAPDVWFV 143


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -2

Query: 427 NAIYSACSCIYTKRKSFWFV 368
           N IY+   C+       WFV
Sbjct: 124 NKIYNLAKCVQESAPDVWFV 143


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 209 HSFLSQFQSNHHLVH 165
           H  L  +QS+HHL H
Sbjct: 64  HRDLPIYQSHHHLHH 78


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 324 HFQPHH*AVLAIC 362
           HFQP + AV A+C
Sbjct: 395 HFQPLNSAVCALC 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,009
Number of Sequences: 438
Number of extensions: 3098
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)