Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30028
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   172   3e-45
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    24   1.1  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   5.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   5.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   5.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.8  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  172 bits (418), Expect = 3e-45
 Identities = 79/87 (90%), Positives = 84/87 (96%)
 Frame = +1

Query: 1   KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGS 180
           KRRATGGKR PIRKKRK+ELGRPAANT+LGPQRIH+VR+RGGN KYRALRLDTGNFSWGS
Sbjct: 10  KRRATGGKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRLDTGNFSWGS 69

Query: 181 ECSTRKTRIIDVVYNASNNELVRTKPL 261
           EC+TRKTRIIDVVYNASNNELVRTK L
Sbjct: 70  ECTTRKTRIIDVVYNASNNELVRTKTL 96



 Score =  146 bits (355), Expect = 1e-37
 Identities = 67/86 (77%), Positives = 75/86 (87%)
 Frame = +3

Query: 252 KTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQ 431
           KTLVKNAIV +DATPFRQWYE HY LPLGRK+GAKLTEAEE ++NKKRS+K   KY ARQ
Sbjct: 94  KTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGAKLTEAEEEVLNKKRSKKAEAKYKARQ 153

Query: 432 RLAKVEGALEEQFHTGRLLACVASRP 509
           R AKVE ALEEQF TGR+LAC++SRP
Sbjct: 154 RFAKVEPALEEQFATGRVLACISSRP 179



 Score = 62.5 bits (145), Expect = 3e-12
 Identities = 26/30 (86%), Positives = 29/30 (96%)
 Frame = +2

Query: 506 PGQCGRADGYILEGKELEFYLRKIKSKRAK 595
           PGQCGR DGYILEGKELEFY+R+IKSK+AK
Sbjct: 179 PGQCGREDGYILEGKELEFYMRRIKSKKAK 208


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = -3

Query: 335 KRQRIMRLIPLPEWSCIYYNNCILDKGFVRTNSLLDALYTTSMIRVLRVEHSDPQEK 165
           K Q +  L+ LP W       CIL    + T   + +L     + ++R   + P E+
Sbjct: 18  KEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQISSLIIPGNVNMIRTHSTXPXEE 74


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 314 LIPLPEWSCIYYNNC 270
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 314 LIPLPEWSCIYYNNC 270
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 314 LIPLPEWSCIYYNNC 270
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 314 LIPLPEWSCIYYNNC 270
           L P P+WS   Y +C
Sbjct: 109 LQPYPDWSFAKYEDC 123


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 314 LIPLPEWSCIYYNNC 270
           L P P+WS   Y +C
Sbjct: 110 LRPYPDWSFAKYEDC 124


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 314 LIPLPEWSCIYYNNC 270
           L P P+WS   Y +C
Sbjct: 108 LQPYPDWSWANYKDC 122


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 314 LIPLPEWSCIYYNNC 270
           L P P+WS   Y +C
Sbjct: 108 LQPYPDWSWANYKDC 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,592
Number of Sequences: 438
Number of extensions: 3196
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)