SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00006
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   156   2e-40
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   156   2e-40
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  156 bits (378), Expect = 2e-40
 Identities = 70/84 (83%), Positives = 79/84 (94%)
 Frame = +2

Query: 257 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 436
           ++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN A
Sbjct: 19  VAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLA 78

Query: 437 NVIRYFPTQALNFAFKDKYKQVFL 508
           NVIRYFPTQALNFAFKDKYKQVFL
Sbjct: 79  NVIRYFPTQALNFAFKDKYKQVFL 102



 Score = 41.1 bits (92), Expect = 1e-05
 Identities = 20/31 (64%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
 Frame = +3

Query: 603 PLDFARTRLAADVGKEMA-A*ISGLGNCISR 692
           PLDFARTRLAADVGK       +GLGNC+++
Sbjct: 135 PLDFARTRLAADVGKAGGEREFTGLGNCLTK 165



 Score = 39.1 bits (87), Expect = 4e-05
 Identities = 18/32 (56%), Positives = 18/32 (56%)
 Frame = +1

Query: 511 GVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYP 606
           GVDK TQF RYF            TSLCFVYP
Sbjct: 104 GVDKNTQFLRYFVGNLASGGAAGATSLCFVYP 135



 Score = 35.9 bits (79), Expect = 4e-04
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +3

Query: 204 MSNLADPVAFAKDFLAG 254
           MS LADPVAFAKDFLAG
Sbjct: 1   MSGLADPVAFAKDFLAG 17



 Score = 28.7 bits (61), Expect = 0.059
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +2

Query: 242 LPGWRISAAVSKTAVA---PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLL 412
           L  W I+  V+  A     P + V+  + +Q  S +  ++  YK  +  +  I K +G  
Sbjct: 213 LISWGIAQVVTTVAGIVSYPFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGN 270

Query: 413 SFWRGNFANVIR 448
           +F++G F+N++R
Sbjct: 271 AFFKGAFSNILR 282



 Score = 22.2 bits (45), Expect = 5.1
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = +2

Query: 260 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 439
           + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+   +RG   +
Sbjct: 125 AGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLYRGFGVS 182

Query: 440 VIRYFPTQALNFAFKD 487
           V      +A  F F D
Sbjct: 183 VQGIIIYRAAYFGFYD 198


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  156 bits (378), Expect = 2e-40
 Identities = 70/84 (83%), Positives = 79/84 (94%)
 Frame = +2

Query: 257 ISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 436
           ++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN A
Sbjct: 19  VAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLA 78

Query: 437 NVIRYFPTQALNFAFKDKYKQVFL 508
           NVIRYFPTQALNFAFKDKYKQVFL
Sbjct: 79  NVIRYFPTQALNFAFKDKYKQVFL 102



 Score = 41.1 bits (92), Expect = 1e-05
 Identities = 20/31 (64%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
 Frame = +3

Query: 603 PLDFARTRLAADVGKEMA-A*ISGLGNCISR 692
           PLDFARTRLAADVGK       +GLGNC+++
Sbjct: 135 PLDFARTRLAADVGKAGGEREFTGLGNCLTK 165



 Score = 39.1 bits (87), Expect = 4e-05
 Identities = 18/32 (56%), Positives = 18/32 (56%)
 Frame = +1

Query: 511 GVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYP 606
           GVDK TQF RYF            TSLCFVYP
Sbjct: 104 GVDKNTQFLRYFVGNLASGGAAGATSLCFVYP 135



 Score = 35.9 bits (79), Expect = 4e-04
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +3

Query: 204 MSNLADPVAFAKDFLAG 254
           MS LADPVAFAKDFLAG
Sbjct: 1   MSGLADPVAFAKDFLAG 17



 Score = 28.7 bits (61), Expect = 0.059
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +2

Query: 242 LPGWRISAAVSKTAVA---PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLL 412
           L  W I+  V+  A     P + V+  + +Q  S +  ++  YK  +  +  I K +G  
Sbjct: 213 LISWGIAQVVTTVAGIVSYPFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGN 270

Query: 413 SFWRGNFANVIR 448
           +F++G F+N++R
Sbjct: 271 AFFKGAFSNILR 282



 Score = 22.2 bits (45), Expect = 5.1
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = +2

Query: 260 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 439
           + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+   +RG   +
Sbjct: 125 AGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLYRGFGVS 182

Query: 440 VIRYFPTQALNFAFKD 487
           V      +A  F F D
Sbjct: 183 VQGIIIYRAAYFGFYD 198


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 436 QRHQVLPDPGAQLRLQGQVQAGVPRGVDK 522
           +R Q   DP   + LQ Q Q+  P G+ K
Sbjct: 773 KRVQTPFDPDVPIELQIQKQSHTPNGIVK 801


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,577
Number of Sequences: 438
Number of extensions: 4004
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -