Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a14r
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    24   1.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    24   1.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.8  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.7  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 388 FAFQRLQTQKINIFKFITDVKNIFYSFIKNVYM 486
           F   + +T K+ I+K+   + +I ++  K V+M
Sbjct: 81  FLISQQKTSKLKIYKWNNQILHILWTSYKKVFM 113


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 388 FAFQRLQTQKINIFKFITDVKNIFYSFIKNVYM 486
           F   + +T K+ I+K+   + +I ++  K V+M
Sbjct: 64  FLISQQKTSKLKIYKWNNQILHILWTSYKKVFM 96


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 537 LVSIYLCLRIVVLSLSTLAPE 599
           LVSI +C+ +VVL++   +P+
Sbjct: 317 LVSISICVTVVVLNVHFRSPQ 337


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 537 LVSIYLCLRIVVLSLSTLAPE 599
           LVSI +C+ +VVL++   +P+
Sbjct: 317 LVSISICVTVVVLNVHFRSPQ 337


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 8   IYNAKYTETIWVCTSCTL 61
           +YN K T TI   T C L
Sbjct: 171 LYNCKRTATITAATDCQL 188


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 662 LAGDVLALINVHLHND 709
           ++G V  LIN+HL +D
Sbjct: 169 ISGTVFDLINIHLFHD 184


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 237 KNKNITIHTLKFLSNHLVKKTKIE 308
           ++  + I+ LKFL    VK +K+E
Sbjct: 335 ESNTMFINILKFLKQKYVKNSKLE 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,872
Number of Sequences: 438
Number of extensions: 4033
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)