Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20015
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    27   0.15 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   1.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   1.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   4.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   4.2  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   5.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.3  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   7.3  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   9.6  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   9.6  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   9.6  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   9.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   9.6  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   9.6  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   9.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   9.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.6  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 7/18 (38%), Positives = 16/18 (88%)
 Frame = +2

Query: 503 KFHYSNSQFSNSNYRNSH 556
           K++Y+N+ ++N+NY N++
Sbjct: 330 KYNYNNNNYNNNNYNNNY 347


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 6/14 (42%), Positives = 13/14 (92%)
 Frame = +2

Query: 503 KFHYSNSQFSNSNY 544
           K++Y+N+ ++N+NY
Sbjct: 95  KYNYNNNNYNNNNY 108


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 6/14 (42%), Positives = 13/14 (92%)
 Frame = +2

Query: 503 KFHYSNSQFSNSNY 544
           K++Y+N+ ++N+NY
Sbjct: 95  KYNYNNNNYNNNNY 108


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +2

Query: 509 HYSNSQFSNSNYRNSH 556
           +Y+N+ ++N NY N++
Sbjct: 95  NYNNNNYNNYNYNNNN 110



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 509 HYSNSQFSNSNYRN 550
           +Y+N  ++N+NY N
Sbjct: 100 NYNNYNYNNNNYNN 113


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/15 (53%), Positives = 13/15 (86%), Gaps = 1/15 (6%)
 Frame = +3

Query: 3   AYELPGFVCE-YLAL 44
           ++ LPGFVC+ Y+A+
Sbjct: 251 SWSLPGFVCDFYIAM 265


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/27 (25%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 512 YSNSQFSNSNYRNSH-RASPSQFTTYK 589
           ++N+ ++N+NY N++   + + +  YK
Sbjct: 324 HNNNNYNNNNYNNNYNNYNNNNYNNYK 350


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +2

Query: 509 HYSNSQFSNSNYR 547
           +YSN+ ++N+NY+
Sbjct: 312 NYSNNYYNNNNYK 324


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
 Frame = -1

Query: 325 PSSPNSPST--CEIAPLKCL*ASESICEHVHNYPPCFLFAHHKIQTC 191
           P  P S  +  CE+   K   A E  C H  N     +  H  +  C
Sbjct: 580 PEPPESVCSLPCEVGQAKKYVAGEQCCWHCFNCTQYQIRDHKDVTQC 626


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 390 NYDLSNLRGRNFQEGTYLDNAHSSLLSN 473
           N  + N +G+N Q+   +   +S+LLS+
Sbjct: 177 NIAIQNTQGKNNQQNILIPVNYSALLSH 204


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 506 FHYSNSQFSNSNYRNSHRASPSQFTTYK 589
           + YSN    N+NY N +  + +    YK
Sbjct: 322 YKYSNYNNYNNNYNNYNNYNNNYNNNYK 349


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/13 (38%), Positives = 12/13 (92%)
 Frame = +2

Query: 509 HYSNSQFSNSNYR 547
           +Y+N+ ++N+NY+
Sbjct: 96  NYNNNNYNNNNYK 108


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/13 (38%), Positives = 12/13 (92%)
 Frame = +2

Query: 509 HYSNSQFSNSNYR 547
           +Y+N+ ++N+NY+
Sbjct: 96  NYNNNNYNNNNYK 108


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/13 (38%), Positives = 12/13 (92%)
 Frame = +2

Query: 509 HYSNSQFSNSNYR 547
           +Y+N+ ++N+NY+
Sbjct: 96  NYNNNNYNNNNYK 108


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/13 (38%), Positives = 12/13 (92%)
 Frame = +2

Query: 509 HYSNSQFSNSNYR 547
           +Y+N+ ++N+NY+
Sbjct: 96  NYNNNNYNNNNYK 108


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 331 FDPSSPNSPST 299
           F PS PNSP +
Sbjct: 63  FSPSGPNSPGS 73


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 496 IACVLYCALDNNEECAL 446
           + CV+YCAL + +  A+
Sbjct: 8   LLCVIYCALVHADTVAI 24


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 496 IACVLYCALDNNEECAL 446
           + CV+YCAL + +  A+
Sbjct: 8   LLCVIYCALVHADTVAI 24


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 331 FDPSSPNSPST 299
           F PS PNSP +
Sbjct: 63  FSPSGPNSPGS 73


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 107 YRHWLWPNL 133
           +RHW +PNL
Sbjct: 862 WRHWKFPNL 870


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,330
Number of Sequences: 438
Number of extensions: 3334
Number of successful extensions: 23
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)