Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30028
         (929 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    28   0.14 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   9.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.1  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 27.9 bits (59), Expect = 0.14
 Identities = 27/112 (24%), Positives = 44/112 (39%)
 Frame = +1

Query: 106 VLEAFGNAKTVRNDNSSRFGKFIRIHFGPSGKLAGADIETYLLEKARVISQQALERSYHI 285
           +L+ F   K +   +S   G+ +   F  + +    D+E     K +V S    E     
Sbjct: 161 LLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQNLEDDVEI----KVQVESVIEFEPGLDS 216

Query: 286 FYQMMSGSVNGLKAICLLSNDVMDYNIVSQGKTVIPGVDDGEEMRITDQAFD 441
           F Q +    N    + LL    MD N++ Q   V+     G    +T+QA D
Sbjct: 217 FTQQLIEMKNAQARVYLLYASKMDANVIFQDAAVMNMTGAGYVWIVTEQALD 268


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 763 ETLDTKQKRQHFIGVLDIAGFEIFDFNGFEQLCINFTN 876
           E L  + K+Q+   +LD+      D + + Q+ IN TN
Sbjct: 101 EDLTAEAKKQNLKVILDLVPNHTSDQHKWFQMSINNTN 138


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 234 KQIGFDVSTSQFSGWTEMDTDEFTETRGVVVT 139
           K   FD++TSQ     E+  D  T  +G +V+
Sbjct: 158 KLFAFDLNTSQLLKQVEIPHDVATTGKGELVS 189


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = -1

Query: 164  PKREELSLRTVLALPNASSTGLVCTT*SSREPFFSWL 54
            P  EE    T   +P        CTT +S+    SW+
Sbjct: 1067 PMSEERRQHTAEGVPEQPPHDTTCTTLTSQTIRISWM 1103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,988
Number of Sequences: 438
Number of extensions: 4770
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)