Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30014X
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.0  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = +2

Query: 383 YAGYVGYNITGWLEKNKDPLNDTVVDQFKKGQNKLLVEIFADH 511
           +AG   + I     K   P++D + D+FK     L  ++++ +
Sbjct: 254 FAGLHSHTIIYLSAKGHRPIDDNIDDEFKGTYKTLYKQMWSQN 296


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 18  ILLVPKFSTTTVLSNSALTSQTRNCSRSLTITCP 119
           I  V K    T+  + +LTS      ++ TITCP
Sbjct: 214 ITYVWKNDEGTLRKSPSLTSLNAYLIKNQTITCP 247


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 18  ILLVPKFSTTTVLSNSALTSQTRNCSRSLTITCP 119
           I  V K    T+  + +LTS      ++ TITCP
Sbjct: 214 ITYVWKNDEGTLRKSPSLTSLNAYLIKNQTITCP 247


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 18  ILLVPKFSTTTVLSNSALTSQTRNCSRSLTITCP 119
           I  V K    T+  + +LTS      ++ TITCP
Sbjct: 265 ITYVWKNDEGTLRKSPSLTSLNAYLIKNQTITCP 298


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 18  ILLVPKFSTTTVLSNSALTSQTRNCSRSLTITCP 119
           I  V K    T+  + +LTS      ++ TITCP
Sbjct: 214 ITYVWKNDEGTLRKSPSLTSLNAYLIKNQTITCP 247


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 191 FAGPCQNQ*KSIQCLRAGTPLAR 123
           + GP QN+ K +  +R G  + R
Sbjct: 430 YRGPKQNKPKVLHAIRRGASILR 452


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 9   VYWILLVPKFSTTTVLSNSALTSQTRNCSRSLTITCPC 122
           + W+  VP +  T     + +T+     S S T+T  C
Sbjct: 717 IIWLAFVPIYFGTGNAHETQITTLCVAISLSATVTLVC 754


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +3

Query: 9   VYWILLVPKFSTTTVLSNSALTSQTRNCSRSLTITCPC 122
           + W+  VP +  T     + +T+     S S T+T  C
Sbjct: 807 IIWLAFVPIYFGTGNAHETQITTLCVAISLSATVTLVC 844


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,240
Number of Sequences: 438
Number of extensions: 3001
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)