Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0011
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    37   2e-04
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.90 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.3  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
 Frame = +1

Query: 271 VGKTALITGCNTGIGKETALDFYKRGARVIMACRSLERAEEAKADIEKSCNNINETGHLV 450
           + + AL+TG N+GIGK        +G +VI     +++ +    +++      ++ G LV
Sbjct: 6   IDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELK------SKPGKLV 59

Query: 451 IAKCDLTSLKSVREFAQNIWIPNH--KFNILVNNAGV 555
             +CDL++   + +  +  W+  +    +IL+NNA +
Sbjct: 60  PLQCDLSNQNDILKVIE--WVEKNLGAIDILINNATI 94


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 433 ETGHLVIAKCDLTSLKSVREFAQNIWIPN 519
           E  HL     +  S+ S+R  +  IW+P+
Sbjct: 91  EQSHLTWKSSEFDSINSIRVKSYEIWVPD 119


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 585 WFRNTVCY 608
           WF+NT CY
Sbjct: 533 WFQNTFCY 540


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 277  KTALITGCNTGIGKETALDFYKRGARVIMACRSLERAEEAKADIEKSCNNI 429
            K A   GC++  G+ T+  F +  A    +   LERA  A +      N++
Sbjct: 888  KPASTPGCSSKNGEPTSAAFAQGFATAASSPGLLERASPAFSGTSSPTNSL 938


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,773
Number of Sequences: 438
Number of extensions: 3907
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)