Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0023
(585 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein ... 25 0.55
AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein ... 25 0.55
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 23 2.2
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 3.9
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 3.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.1
DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor pro... 22 5.1
DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor pro... 22 5.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.1
AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled rec... 22 5.1
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 22 5.1
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 21 6.7
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 8.9
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 21 8.9
AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phospha... 21 8.9
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 21 8.9
>DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein 2
protein.
Length = 117
Score = 25.0 bits (52), Expect = 0.55
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 127 FLRRAEHCMGKVAEAPESPVSKCVSSMSPIVV 32
+LRR C + EAP PV + + S++P+V+
Sbjct: 47 YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76
>AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein
protein.
Length = 117
Score = 25.0 bits (52), Expect = 0.55
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 127 FLRRAEHCMGKVAEAPESPVSKCVSSMSPIVV 32
+LRR C + EAP PV + + S++P+V+
Sbjct: 47 YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 23.0 bits (47), Expect = 2.2
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +3
Query: 228 DIFNGKKYEDIC 263
D+ N +KYED+C
Sbjct: 597 DLSNERKYEDVC 608
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 22.2 bits (45), Expect = 3.9
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 193 FPVLDVDISTILHGR 149
FPVL V I+ +LHG+
Sbjct: 8 FPVLFVIINVLLHGQ 22
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 3.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 46 TSKTHTLRPETPGPQ 90
T H PETPGPQ
Sbjct: 462 TPHHHPHPPETPGPQ 476
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.1
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -3
Query: 445 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 347
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.1
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -3
Query: 445 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 347
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.1
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -3
Query: 445 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 347
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.1
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -3
Query: 445 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 347
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.1
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -3
Query: 445 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 347
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.1
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -3
Query: 445 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 347
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 21.8 bits (44), Expect = 5.1
Identities = 8/27 (29%), Positives = 12/27 (44%)
Frame = +1
Query: 172 CPHPKPESTATLKFTWLGLISSMVKSM 252
CP P TWLG ++S + +
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPL 379
>DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 21.8 bits (44), Expect = 5.1
Identities = 8/27 (29%), Positives = 12/27 (44%)
Frame = +1
Query: 172 CPHPKPESTATLKFTWLGLISSMVKSM 252
CP P TWLG ++S + +
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPL 379
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.1
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -3
Query: 445 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 347
N L + +R N PSG +RS+ +P+S R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.1
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -3
Query: 445 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 347
N L + +R N PSG +RS+ +P+S R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446
>AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled
receptor protein.
Length = 399
Score = 21.8 bits (44), Expect = 5.1
Identities = 8/27 (29%), Positives = 12/27 (44%)
Frame = +1
Query: 172 CPHPKPESTATLKFTWLGLISSMVKSM 252
CP P TWLG ++S + +
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPL 379
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 21.8 bits (44), Expect = 5.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -2
Query: 500 CFDGDDALLTAGFQHGAQQFLAA 432
C D DD LL G++ AA
Sbjct: 670 CLDDDDTLLEVALSLGSEALSAA 692
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.4 bits (43), Expect = 6.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 314 LVVFALHVRYVHVVCG 267
LV FAL +R +VCG
Sbjct: 707 LVTFALVLRPTDIVCG 722
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.0 bits (42), Expect = 8.9
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +2
Query: 116 PA*KWFRYAEGSS 154
P +W+++ EGSS
Sbjct: 242 PVHRWYKFIEGSS 254
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 249 YEDICPSTHNMDV 287
YE PSTH MD+
Sbjct: 46 YERFSPSTHLMDL 58
>AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phosphate
dehydrogenase protein.
Length = 363
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 228 DIFNGKKYEDICPSTH 275
+I NGKK +I TH
Sbjct: 44 EIINGKKLTEIINETH 59
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.0 bits (42), Expect = 8.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 409 VPRSPSGILRSSRRSPLS 356
VP+S +G+ SSRRS ++
Sbjct: 239 VPKSVAGLNVSSRRSDMN 256
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,959
Number of Sequences: 438
Number of extensions: 4120
Number of successful extensions: 24
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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