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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0002
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    25   0.91 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.9  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    21   8.5  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    21   8.5  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    21   8.5  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    21   8.5  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    21   8.5  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    21   8.5  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    21   8.5  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   8.5  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   8.5  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   8.5  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 116 ETRKNLILTSETKVIVQGFTGKQGTFHSQQAL-DYGTKVVGGVSPKKAGTEHL 271
           + R  L    +T ++ + ++ +       Q++ DY +  +  V  KKAG++HL
Sbjct: 287 DLRSQLEYDLQTSIMSRHYSTRAIVIEKGQSIWDYDSTYIPKVKNKKAGSKHL 339


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 566 CIGVVSRSGTLTYEACHQTTITGLGQTLC 652
           CIG +  S    ++  + TT +G+ + LC
Sbjct: 126 CIGRIQWSKLQVFDCRYVTTTSGMFEALC 154


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 2   RRFTFNNSTMAMPVRVLSKFKDGLKLG 82
           R  TF  +    P++ +S  KDG  LG
Sbjct: 323 RPATFTCNVRGNPIKTVSWLKDGKPLG 349


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -2

Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
           +P+  + +  VP ++G+ PP  ++
Sbjct: 82  IPSHYIEQIPVPVYYGNFPPRPIM 105


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -2

Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
           +P+  + +  VP ++G+ PP  ++
Sbjct: 82  IPSHYIEQIPVPVYYGNFPPRPIM 105


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -2

Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
           +P+  + +  VP ++G+ PP  ++
Sbjct: 82  IPSHYIEQIPVPVYYGNFPPRPIM 105


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -2

Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
           +P+  + +  VP ++G+ PP  ++
Sbjct: 82  IPSHYIEQIPVPVYYGNFPPRPIM 105


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -2

Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
           +P+  + +  VP ++G+ PP  ++
Sbjct: 82  IPSHYIEQIPVPVYYGNFPPRPIM 105


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -2

Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
           +P+  + +  VP ++G+ PP  ++
Sbjct: 82  IPSHYIEQIPVPVYYGNFPPRPIM 105


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -2

Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
           +P+  + +  VP ++G+ PP  ++
Sbjct: 82  IPSHYIEQIPVPVYYGNFPPRPIM 105


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -2

Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
           +P+  + +  VP ++G+ PP  ++
Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIM 354


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -2

Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
           +P+  + +  VP ++G+ PP  ++
Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIM 354


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -2

Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
           +P+  + +  VP ++G+ PP  ++
Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIM 354


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -2

Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
           +P+  + +  VP ++G+ PP  ++
Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIM 354


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -2

Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
           +P+  + +  VP ++G+ PP  ++
Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIM 354


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -2

Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
           +P+  + +  VP ++G+ PP  ++
Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIM 354


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -2

Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
           +P+  + +  VP ++G+ PP  ++
Sbjct: 315 IPSHYIEQIPVPVYYGNFPPRPIM 338


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -2

Query: 291 VPNTGLPRCSVPAFFGDTPPTTLV 220
           +P+  + +  VP ++G+ PP  ++
Sbjct: 331 IPSHYIEQIPVPVYYGNFPPRPIM 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,991
Number of Sequences: 438
Number of extensions: 4244
Number of successful extensions: 22
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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