Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0021
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    57   2e-10
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.76 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.3  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 56.8 bits (131), Expect = 2e-10
 Identities = 55/196 (28%), Positives = 90/196 (45%), Gaps = 11/196 (5%)
 Frame = +3

Query: 75  KVALITGAASGIGLAYSEELLKQGAKVSLCDIDSERGEQVTEKLASKYGRKNVLFCRLDV 254
           +VAL+TGA SGIG    E L+ +G KV       ++ + + E+L SK G+   L C  D+
Sbjct: 8   EVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQC--DL 65

Query: 255 TDYPQFEEAFVMTVEEFNRIDIVINNA------GFMNDRL--WELEVDVNLNGVIRGTLL 410
           ++     +      +    IDI+INNA         ND +  W+   D+NL G+      
Sbjct: 66  SNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMIQE 125

Query: 411 AYRFMGKDRGGQGGVIV--NTASTAFARP-QVSTPIYTATNYAIVGLTRAYGDQYHVNVT 581
             + M K +G   G+IV  N AS     P   + P Y A+  A+  LT     +     +
Sbjct: 126 VLKLM-KKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSELAQCES 184

Query: 582 GVRCLVVCPGLTDSGL 629
            ++ + + P L ++ +
Sbjct: 185 NIKVISISPDLVETDM 200


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
 Frame = +3

Query: 327 NNAGFMNDRLWELEVDVNLNGVIRGTLLAYRFMGKDRGGQGGVIVNTASTAFARPQVSTP 506
           NN     + L +   + +L  + RG  L +     D  G G + VN    AF++    + 
Sbjct: 249 NNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDTDGDGKLNVNEFYMAFSKLYSVSV 308

Query: 507 IYTATNYAIVGLTRAYGDQYHV--NVTG 584
           +    +  +  ++   GD   +  +VTG
Sbjct: 309 VSLDKSLEVNHISARVGDNVEIKCDVTG 336


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 632 HQTTVRESRAHDEASHSGHIDVVLIPVSSGEANNSVVR 519
           HQ   +    H ++ H  HI+     V SG+   SV++
Sbjct: 796 HQHAAQMIYGHQQSHHGLHINSSPSSVQSGQQQQSVLQ 833


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,690
Number of Sequences: 438
Number of extensions: 4432
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)