SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b04
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.20 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.46 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.4  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   7.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = -2

Query: 464 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 294
           + ++QQ+R  + ++   LR  E +  V E     GG        G+ D S  ++ T+
Sbjct: 165 QQQQQQQRQQQRQEERRLRPDEIKVEVGEDEFANGGAARDESKAGSTDASTPATVTT 221



 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -2

Query: 464  ESEEQQERHHKTEQTHSLRQGE 399
            + ++QQ++  + +Q H  R+ E
Sbjct: 1219 QQQQQQQQQQQQQQQHQARERE 1240


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 87  WRQTAFCFYKVRRATTKNTEKEETGL 10
           W Q  FC+++   AT KN  +    L
Sbjct: 533 WFQNTFCYFRRNAATWKNAVRHNLSL 558



 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 485 FLKVNSLESEEQQERHHK-TEQTHSLRQ 405
           F++ +SL  ++QQ++HH+ +   H+  Q
Sbjct: 91  FMQQHSLYLQQQQQQHHQDSSSEHASNQ 118


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 34  VLCCRAPHLI 63
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 34  VLCCRAPHLI 63
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 34  VLCCRAPHLI 63
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 34  VLCCRAPHLI 63
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 34  VLCCRAPHLI 63
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 34  VLCCRAPHLI 63
           V+ CRAPH+I
Sbjct: 450 VILCRAPHII 459


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 34  VLCCRAPHLI 63
           V+ CRAPH+I
Sbjct: 518 VILCRAPHII 527


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 34  VLCCRAPHLI 63
           V+ CRAPH+I
Sbjct: 518 VILCRAPHII 527


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 181 LLSLHSSLQCGPSRPHRSLRTLTLLPNS 264
           +L ++  L C   +  +S+R +T LP++
Sbjct: 208 MLGIYCRLYCYAQKHVKSIRAVTKLPDT 235


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 467 LESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTS-SGTS 294
           ++S E++ER H   +    R+        EQL  + G+ G+    G    S+++ +G+S
Sbjct: 97  IKSLEERERKHAVHKEQLSREQRFLRRRLEQLTNQTGLHGLHGLHGLHGLSSSAPTGSS 155


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/11 (63%), Positives = 9/11 (81%), Gaps = 1/11 (9%)
 Frame = +1

Query: 151 QQYP-PIHRWY 180
           Q +P P+HRWY
Sbjct: 237 QGFPVPVHRWY 247


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 385 TPFWVSPCLRLW 420
           TPF V P L++W
Sbjct: 183 TPFTVLPLLKVW 194


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 385 TPFWVSPCLRLW 420
           TPF V P L++W
Sbjct: 183 TPFTVLPLLKVW 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,230
Number of Sequences: 438
Number of extensions: 3759
Number of successful extensions: 20
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -