Silkworm BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0039
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   2.4  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   2.4  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   2.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.2  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 591 RSINKETLQLCLNKLKKMVYEKF 523
           R IN+E + +  NK++KMV   F
Sbjct: 371 RYINREYILVLSNKMQKMVNNDF 393


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 591 RSINKETLQLCLNKLKKMVYEKF 523
           R IN+E + +  NK++KMV   F
Sbjct: 371 RYINREYILVLSNKMQKMVNNDF 393


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 591 RSINKETLQLCLNKLKKMVYEKF 523
           R IN+E + +  NK++KMV   F
Sbjct: 371 RYINREYILVLSNKMQKMVNNDF 393


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 326 STNQNSCCFFFVEPVA--SSPFRAHKIQKKIQKGDLCVSPK 442
           +T +N+C     E     S  F   ++ K +QKG +C+  K
Sbjct: 479 NTVENACVLKNTEIFKDKSDWFDYSEVSKWVQKGQICLKEK 519


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,550
Number of Sequences: 438
Number of extensions: 4086
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)