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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060054.seq
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    29   0.034
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.0  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.0  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.0  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 0.034
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 65  CSLFSRAEFLQPGGSTSSRAA 3
           C ++++ EFL PGGS   R A
Sbjct: 62  CEIYAKCEFLNPGGSVKDRIA 82


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 613 LTTPYKPLLSNIESNEFK 560
           L+T   PLL NI SN+F+
Sbjct: 339 LSTTVNPLLYNIMSNKFR 356


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 418 LDQVGDPFCIFCQLH 374
           ++ +GD +C+ C LH
Sbjct: 535 VETIGDAYCVACGLH 549


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 419 VGPSWGSILYILSTPCCLSHVTP 351
           V PSW  +L++   PC L    P
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRP 312


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 419 VGPSWGSILYILSTPCCLSHVTP 351
           V PSW  +L++   PC L    P
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRP 312


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 419 VGPSWGSILYILSTPCCLSHVTP 351
           V PSW  +L++   PC L    P
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRP 312


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 419 VGPSWGSILYILSTPCCLSHVTP 351
           V PSW  +L++   PC L    P
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRP 312


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 419 VGPSWGSILYILSTPCCLSHVTP 351
           V PSW  +L++   PC L    P
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRP 312


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 419 VGPSWGSILYILSTPCCLSHVTP 351
           V PSW  +L++   PC L    P
Sbjct: 290 VMPSWIKMLFLQWLPCLLRMSRP 312


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 616 NLTTPYKPLLSNIESNEFKTFG 551
           N+T   + LL N E+N+  T G
Sbjct: 36  NITMVLENLLMNYENNQLPTHG 57


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 419 VGPSWGSILYILSTPCCLSHVTP 351
           V PSW  +L++   PC L    P
Sbjct: 358 VMPSWIKMLFLQWLPCLLRMSRP 380


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 419 VGPSWGSILYILSTPCCLSHVTP 351
           V PSW  +L++   PC L    P
Sbjct: 358 VMPSWIKMLFLQWLPCLLRMSRP 380


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +3

Query: 483 PNIIAH*SDPSIADVNGFHIIIIPKVLNSFDSILESKGLYGVVKL 617
           PN     S+ SI +     +  + +V++ FD+IL+      ++K+
Sbjct: 795 PNFADFYSEESINNQGLECLRFLNEVISDFDAILDQNKFKDIIKI 839


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,061
Number of Sequences: 438
Number of extensions: 4667
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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