Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40032
         (892 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24320.1 68416.m03054 DNA mismatch repair MutS family (MSH1) ...    28   7.2  
At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal hydrolase-r...    28   7.2  
At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal hydrolase-r...    28   7.2  

>At3g24320.1 68416.m03054 DNA mismatch repair MutS family (MSH1) low
           similarity to SP|Q56239 DNA mismatch repair protein mutS
           {Thermus aquaticus}; contains Pfam profiles PF05190:
           MutS family domain IV, PF01624: MutS domain I, PF01541:
           Endo/excinuclease amino terminal domain
          Length = 1118

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 699 KNLNQKLWVKVLLQTCKKPGS 761
           K+L+  +W K  LQTCKKP +
Sbjct: 75  KDLSHLVWWKERLQTCKKPST 95


>At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1147

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/81 (25%), Positives = 32/81 (39%)
 Frame = +3

Query: 48  QNRHLSPTKQLKNLTLHQLRNKNHQMTATVMMMLRQNLKSSLLNQ*KQIQYVHPKKKRNH 227
           Q  HLS  KQ K       + KN     T   M + ++  S +N   ++    PK     
Sbjct: 737 QAEHLSEEKQEKGKKSGSNKKKNRSNKRTSASMSKDDVHESSVNLEPKVTPPSPKSTEED 796

Query: 228 QMTIVVMMN*EKGSTKISCYT 290
            M     ++ E+G  +IS  T
Sbjct: 797 SMEPEDTLSSERGRLEISSNT 817


>At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1121

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/81 (25%), Positives = 32/81 (39%)
 Frame = +3

Query: 48  QNRHLSPTKQLKNLTLHQLRNKNHQMTATVMMMLRQNLKSSLLNQ*KQIQYVHPKKKRNH 227
           Q  HLS  KQ K       + KN     T   M + ++  S +N   ++    PK     
Sbjct: 737 QAEHLSEEKQEKGKKSGSNKKKNRSNKRTSASMSKDDVHESSVNLEPKVTPPSPKSTEED 796

Query: 228 QMTIVVMMN*EKGSTKISCYT 290
            M     ++ E+G  +IS  T
Sbjct: 797 SMEPEDTLSSERGRLEISSNT 817


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,832,952
Number of Sequences: 28952
Number of extensions: 260958
Number of successful extensions: 766
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)