Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40021
(381 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 120 3e-28
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 120 3e-28
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 119 8e-28
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 33 0.049
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 28 2.4
At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family... 28 2.4
At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family... 28 2.4
At5g41670.2 68418.m05063 6-phosphogluconate dehydrogenase family... 27 3.2
At5g41670.1 68418.m05062 6-phosphogluconate dehydrogenase family... 27 3.2
At1g53700.1 68414.m06110 protein kinase, putative similar to cuc... 27 4.2
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 27 4.2
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein... 27 4.2
At2g28960.1 68415.m03523 leucine-rich repeat protein kinase, put... 27 5.6
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein 27 5.6
At3g48280.1 68416.m05269 cytochrome P450, putative nearly identi... 26 7.4
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 26 7.4
At5g59650.1 68418.m07479 leucine-rich repeat protein kinase, put... 26 9.7
At5g59130.1 68418.m07411 subtilase family protein contains simil... 26 9.7
At4g32880.1 68417.m04679 homeobox-leucine zipper transcription f... 26 9.7
At4g03490.1 68417.m00476 ankyrin repeat family protein contains ... 26 9.7
At2g29000.1 68415.m03527 leucine-rich repeat family protein / pr... 26 9.7
At1g64190.1 68414.m07272 6-phosphogluconate dehydrogenase family... 26 9.7
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 120 bits (289), Expect = 3e-28
Identities = 54/86 (62%), Positives = 69/86 (80%)
Frame = -3
Query: 259 PMSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 80
P+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL
Sbjct: 120 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAK 179
Query: 79 LNISPFSYGLVVKQVYDSGTIFAPEI 2
L I PFSYGLVV+ VYD+G++F+PE+
Sbjct: 180 LGIRPFSYGLVVQSVYDNGSVFSPEV 205
Score = 52.8 bits (121), Expect = 7e-08
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = -1
Query: 378 LLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAP 256
LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP
Sbjct: 80 LLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 120 bits (289), Expect = 3e-28
Identities = 54/86 (62%), Positives = 69/86 (80%)
Frame = -3
Query: 259 PMSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 80
P+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL
Sbjct: 120 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAK 179
Query: 79 LNISPFSYGLVVKQVYDSGTIFAPEI 2
L I PFSYGLVV+ VYD+G++F+PE+
Sbjct: 180 LGIRPFSYGLVVQSVYDNGSVFSPEV 205
Score = 52.8 bits (121), Expect = 7e-08
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = -1
Query: 378 LLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAP 256
LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP
Sbjct: 80 LLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 119 bits (286), Expect = 8e-28
Identities = 54/86 (62%), Positives = 68/86 (79%)
Frame = -3
Query: 259 PMSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 80
P+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL
Sbjct: 121 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180
Query: 79 LNISPFSYGLVVKQVYDSGTIFAPEI 2
L I PFSYGLVV+ VYD+G++F PE+
Sbjct: 181 LGIRPFSYGLVVESVYDNGSVFNPEV 206
Score = 52.8 bits (121), Expect = 7e-08
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = -1
Query: 378 LLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAP 256
LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP
Sbjct: 81 LLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 121
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 33.5 bits (73), Expect = 0.049
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = -3
Query: 214 EKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGL 50
E + L +P +++KGT+E++ D + + G ++ A +L +L + ++ L
Sbjct: 149 EMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKL 203
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
domain-containing protein similarity to
TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 6 SGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPFEILVGI 185
+G+ PE+Y+ + PYE E + R +++ P +P + L+ + EI G
Sbjct: 371 NGSNEAPEAYSPMDISPYEETE---VCREFSADIPPTAPNYLFDAELVAATERMEINEGD 427
Query: 186 E 188
E
Sbjct: 428 E 428
>At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 140 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*HGAMAPGRAGAWTLFSN 304
IVD N N R K++ E G L+ GV GG + + G++ + N
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEEGARNGPSMMPGGSYEAYKN 156
>At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 140 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*HGAMAPGRAGAWTLFSN 304
IVD N N R K++ E G L+ GV GG + + G++ + N
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEEGARNGPSMMPGGSYEAYKN 156
>At5g41670.2 68418.m05063 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
Length = 487
Score = 27.5 bits (58), Expect = 3.2
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 140 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*HGAMAPGRAGAWTLFSN 304
I+D N N R E++GLL+ GV GG + + G++T ++N
Sbjct: 103 IIDGGNEWYQNTERRIVEAEKKGLLYLGMGVSGGEEGARNGPSLMPGGSFTAYNN 157
>At5g41670.1 68418.m05062 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
Length = 487
Score = 27.5 bits (58), Expect = 3.2
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 140 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*HGAMAPGRAGAWTLFSN 304
I+D N N R E++GLL+ GV GG + + G++T ++N
Sbjct: 103 IIDGGNEWYQNTERRIVEAEKKGLLYLGMGVSGGEEGARNGPSLMPGGSFTAYNN 157
>At1g53700.1 68414.m06110 protein kinase, putative similar to
cucumber protein kinase CsPK3 [Cucumis sativus]
gi|7416109|dbj|BAA93704
Length = 476
Score = 27.1 bits (57), Expect = 4.2
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +3
Query: 12 AKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPFEILVGIER 191
A+I YTCL NG++ ++LR+ + +SP +++++ L + R
Sbjct: 159 ARIDASHYTCLLIDYCPNGDLHSLLRKQPNNRLPISPVRFFAAEVLVALEYLHALGIVYR 218
Query: 192 AWKKE 206
K E
Sbjct: 219 DLKPE 223
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 27.1 bits (57), Expect = 4.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 372 PHIKGNVGFVFTRGDLVEVRDKLL 301
PHI VGF+ T+GD+ + D L
Sbjct: 792 PHINDWVGFMLTKGDIKSIVDPKL 815
>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
protein-related similar to ATP-dependent Clp protease,
ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
putida KT2440]; similar to ClpB protein
(SP:Q9RA63){Thermus thermophilus}
Length = 422
Score = 27.1 bits (57), Expect = 4.2
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +1
Query: 256 WGNGTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQ 378
+G+ T + +LQ + +S+GE E +D W Q
Sbjct: 337 FGSETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQ 377
>At2g28960.1 68415.m03523 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 880
Score = 26.6 bits (56), Expect = 5.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -1
Query: 372 PHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPCQSSFPPTT 229
PHI VG++ T+GD+ V D L + + A+ S P++
Sbjct: 782 PHIAAWVGYMLTKGDIENVVDPRLNRDYEPTSVWKALEIAMSCVNPSS 829
>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
Length = 356
Score = 26.6 bits (56), Expect = 5.6
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +3
Query: 264 WHQDELELGLCSPTVC 311
WHQ+ ++G+C T+C
Sbjct: 225 WHQNIQDIGVCEDTIC 240
>At3g48280.1 68416.m05269 cytochrome P450, putative nearly identical
to cytochrome P450 71A25 (SP:Q9STK8) [Arabidopsis
thaliana];
Length = 490
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 2 YFRCKNSSRIIYLLNNKTI*EWRDVQHVE 88
Y+R S +I+LL+NK + +RDV+ E
Sbjct: 121 YWRQMKSVCVIHLLSNKMVRSFRDVREEE 149
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 26.2 bits (55), Expect = 7.4
Identities = 8/38 (21%), Positives = 18/38 (47%)
Frame = +1
Query: 250 LTWGNGTRTSWSLDFVLQQFVTDLNEVSAGEHEANVAL 363
+ W G + W+ D V + +N ++ H+ ++L
Sbjct: 83 ILWKEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSL 120
>At5g59650.1 68418.m07479 leucine-rich repeat protein kinase,
putative contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 892
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 369 HIKGNVGFVFTRGDLVEVRDKLLENKVQA 283
HI VGF TRGD+ ++ D L ++
Sbjct: 797 HISQWVGFELTRGDITKIMDPNLNGDYES 825
>At5g59130.1 68418.m07411 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo]
Length = 732
Score = 25.8 bits (54), Expect = 9.7
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -3
Query: 202 FFQ-ALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDS 26
F+Q A I + S+G I+ D ILKP E N L SPF VK +S
Sbjct: 454 FYQTAPKILSFSSRGPNIIVAD--ILKPDITAPGLEILAANSLRASPFYDTAYVKYSVES 511
Query: 25 GT 20
GT
Sbjct: 512 GT 513
>At4g32880.1 68417.m04679 homeobox-leucine zipper transcription
factor (HB-8) identical to HD-zip transcription factor
(athb-8) (GI:7270235) [Arabidopsis thaliana]
Length = 833
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/48 (25%), Positives = 29/48 (60%)
Frame = -3
Query: 154 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFA 11
EI+ ++++P + G S +++ ++ P+S V++ +Y+S T+ A
Sbjct: 309 EILPSGYLIRPCEG-GGSILHIVDHFDLEPWSVPEVLRSLYESSTLLA 355
>At4g03490.1 68417.m00476 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 587
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 233 VGGNDD*HGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 361
+ GN H A + W ++ ++ +TR+PRV+ + +P
Sbjct: 294 IEGNTPLHLASSNSHPKVWLIWMALVAAGTTRAPRVHLRADIP 336
>At2g29000.1 68415.m03527 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 872
Score = 25.8 bits (54), Expect = 9.7
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = -1
Query: 372 PHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPCQSSFPPTT 229
PHI VG + T+GD+ + D L + + + A+ S P++
Sbjct: 774 PHIAEWVGLMLTKGDIKSIMDPKLNGEYDSSSVWKALELAMSCVNPSS 821
>At1g64190.1 68414.m07272 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
Length = 487
Score = 25.8 bits (54), Expect = 9.7
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 140 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*HGAMAPGRAGAWTLFSN 304
I+D N N R E++GLL+ GV GG + + G++ + N
Sbjct: 103 IIDGGNEWYQNTERRISEAEQKGLLYLGMGVSGGEEGARNGPSLMPGGSFQAYDN 157
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,936,612
Number of Sequences: 28952
Number of extensions: 178925
Number of successful extensions: 522
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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