Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40012
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02680.1 68414.m00218 transcription initiation factor IID (TF...   101   6e-22
At5g57120.1 68418.m07132 expressed protein weak similarity to SP...    28   6.9  

>At1g02680.1 68414.m00218 transcription initiation factor IID
           (TFIID) 18 kDa subunit (TAFII-18) family protein similar
           to transcription factor TFIID (SP:Q15543) [Homo
           sapiens]; contains Pfam PF02269: Transcription
           initiation factor IID, 18kD subunit
          Length = 126

 Score =  101 bits (241), Expect = 6e-22
 Identities = 44/79 (55%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
 Frame = +3

Query: 255 YGFGDDQNPYTESVDFLEDLVIEFITETTHRAMEVG-RTGRVQVEDIIFLVRKDARKYAR 431
           YGFGD+QNP  ESV  +ED+V+E++T+ TH+A E+G + GR+ V+D ++L+RKD  K  R
Sbjct: 40  YGFGDEQNPLPESVALVEDIVVEYVTDLTHKAQEIGSKRGRLLVDDFLYLIRKDLPKLNR 99

Query: 432 VKDLLTMNEELKKARKAFD 488
            ++LL M EELK+ARKAFD
Sbjct: 100 CRELLAMQEELKQARKAFD 118


>At5g57120.1 68418.m07132 expressed protein weak similarity to
           SP|Q14978 Nucleolar phosphoprotein p130 {Homo sapiens}
          Length = 330

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +3

Query: 291 SVDFLEDLVIEFITETTHRAMEVGRTGRVQVEDIIFLVRKDARKYARVKDLLTMNEELK 467
           S+  LE++  EF+ +  H A   G T    V + +  V+KD +K    +  + + EE K
Sbjct: 52  SLPDLEEIFSEFLNKRDHEAAANGNT-EANVVEAVENVKKDKKKKKNKETKVEVTEEEK 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,158,003
Number of Sequences: 28952
Number of extensions: 207191
Number of successful extensions: 543
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)