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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40006
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54650.2 68418.m06805 formin homology 2 domain-containing pro...    33   0.16 
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro...    33   0.16 
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea...    32   0.29 
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro...    30   0.88 
At5g27870.1 68418.m03343 pectinesterase family protein similar t...    30   1.2  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    29   1.5  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    29   1.5  
At5g46380.1 68418.m05708 hypothetical protein                          29   2.0  
At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat...    29   2.7  
At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL...    28   3.5  
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family...    28   3.5  
At5g03980.1 68418.m00378 GDSL-motif lipase/hydrolase family prot...    28   4.7  
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g...    28   4.7  
At3g18890.1 68416.m02399 expressed protein similar to UV-B and o...    28   4.7  
At1g66145.1 68414.m07507 CLE18, putative CLAVATA3/ESR-Related 18...    28   4.7  
At5g53130.1 68418.m06604 cyclic nucleotide-regulated ion channel...    27   6.2  
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con...    27   6.2  
At5g52680.1 68418.m06540 heavy-metal-associated domain-containin...    27   8.2  
At5g37040.1 68418.m04442 F-box family protein contains Pfam prof...    27   8.2  
At5g01090.1 68418.m00013 legume lectin family protein contains P...    27   8.2  
At4g34150.1 68417.m04846 C2 domain-containing protein similar to...    27   8.2  
At4g13390.1 68417.m02092 proline-rich extensin-like family prote...    27   8.2  
At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family...    27   8.2  
At3g13460.2 68416.m01694 expressed protein contains Pfam profile...    27   8.2  
At3g13460.1 68416.m01693 expressed protein contains Pfam profile...    27   8.2  
At2g31020.1 68415.m03782 oxysterol-binding family protein simila...    27   8.2  
At1g31430.1 68414.m03849 pentatricopeptide (PPR) repeat-containi...    27   8.2  
At1g52030.2 68414.m05870 myrosinase-binding protein, putative (F...    24   8.8  
At1g52030.1 68414.m05869 myrosinase-binding protein, putative (F...    24   8.8  

>At5g54650.2 68418.m06805 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 16  RGYAPVRGCFPAPLPATMPRHSRVPPSIPSLHARQPWRKSS 138
           R  A   G  P+P P+  P+ SR PP  P+     P RKSS
Sbjct: 136 RNLATKPGSSPSPSPSRPPKRSRGPPRPPTRPKSPPPRKSS 176


>At5g54650.1 68418.m06804 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 900

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 16  RGYAPVRGCFPAPLPATMPRHSRVPPSIPSLHARQPWRKSS 138
           R  A   G  P+P P+  P+ SR PP  P+     P RKSS
Sbjct: 136 RNLATKPGSSPSPSPSRPPKRSRGPPRPPTRPKSPPPRKSS 176


>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
           family protein similar to Vegetatible incompatibility
           protein HET-E-1 (SP:Q00808) {Podospora anserina};
           contains 5 WD-40 repeats (PF00400); similar to  beta
           transducin-like protein HET-E2C*4
           (GP:17225206)[Podospora anserina]
          Length = 530

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = +2

Query: 299 FSSIENATAPGKVSGLPAIARSASPVTTFSIASAASPVVSLISTDGCSARK 451
           +SS +N + P  VS + A+A   SPV   S+A A S  VSL S+   S+ +
Sbjct: 40  WSSFKNHSTPNLVSSVAALA--FSPVHPHSLAVAHSATVSLFSSQSLSSSR 88


>At5g07760.1 68418.m00888 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 853

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 273 RGQSALLPDSPASKTPLRRARFPVYPQSPDPLHQ*PPFPSHLP 401
           RG+  L P  P    P+RR R P+ P  P P+ +  P P   P
Sbjct: 18  RGRVPLPPPPPPPPPPMRR-RAPLPPPPPPPMRRRAPLPPPPP 59


>At5g27870.1 68418.m03343 pectinesterase family protein similar to
           pectinesterase (EC 3.1.1.11) from Salix gilgiana
           GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
           vulgaris SP|Q43111; contains Pfam profile PF01095
           pectinesterase
          Length = 732

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +2

Query: 245 HLISTGQGSAGAISTTARFSSIENATAPGKVSGLPAIARSASPVTTFSIASAASPVVSLI 424
           HL S     +  ++ +A  S+  +A+     S  P+ + SASP  + S++ +ASP  S  
Sbjct: 669 HLGSPSDTPSSVVTPSASPSTSPSASPSVSPSAFPSASPSASPSASPSVSPSASPSASPQ 728

Query: 425 STDG 436
           S+ G
Sbjct: 729 SSIG 732


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 294 PDSPASKTPLRRARFPVY-PQSPDPLHQ*PPFPSHLPHHQ**V*SPPTGVPRGRIPESA 467
           P +  +KTP   A  PV  P+SP P+ +  P P+ +P       SPP   P    P S+
Sbjct: 51  PTTAPAKTPTASASSPVESPKSPAPVSESSPPPTPVPES-----SPPVPAPMVSSPVSS 104


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +3

Query: 294 PDSPASKTPLRRARFP----VY-PQSPDPLHQ*PPFPSHLPHHQ**V*SPPTGVP 443
           P+ P  ++P++  R P    V+ P  P P+H  PP P + P     V SPP   P
Sbjct: 478 PNDPYDQSPVKFRRSPPPPPVHSPPPPSPIHSPPPPPVYSPPPPPPVYSPPPPPP 532


>At5g46380.1 68418.m05708 hypothetical protein
          Length = 607

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -1

Query: 244 SVEKPDWSTVPFIMADQGPVRRRIELWFRRNKISNPMIYATVGGHEAMVSMVAL 83
           S++ P+ +T P  M  Q   R  +  W+  + ++  M  A+  G    VSM  +
Sbjct: 376 SLQMPNLNTFPDSMHQQAFTREHVNAWYSASPLNQSMYAASSLGRRLPVSMTEM 429


>At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty
           acid multifunctional protein (AIM1) identical to
           gi:4337025; contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 721

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -2

Query: 477 SHLPPILESFRAEHPSVEIKLTTGDAADAMEK--VVTGEADLAIAGKPETLPGAVAFSML 304
           +HL P+LE  R+++ S ++ L       A++K  VV G   +  A      P + A  ML
Sbjct: 451 AHLMPLLEIVRSKNTSAQVILDLMAVGKAIKKVPVVVGNC-IGFAVNRTFFPYSQAAHML 509

Query: 303 ENLAVVL 283
            NL V L
Sbjct: 510 ANLGVDL 516


>At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1
           (PLDBETA1) identical to SP|P93733 Phospholipase D beta 1
           (EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta)
           {Arabidopsis thaliana}; contains Pfam profiles: PF00614
           phospholipase D.active site motif, PF00168 C2 domain
          Length = 1083

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +3

Query: 303 PASKTPLRRARFPVYPQSPDPLHQ*PPFPSHLPHHQ 410
           P    P  +   P YP  P P    PP+ S  P HQ
Sbjct: 32  PYPPPPTNQYSAPYYPYPPPPYATPPPYASPPPPHQ 67


>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 185

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 267 AARGQSALLPDSPASKTPLRRARFPVYPQSPDPLHQ*PPFPSHL 398
           AA G + +    P  ++P   +  P  P+SP P    PP PS L
Sbjct: 135 AAAGTTTIAGQPPPPESPPPESLPPPSPESPSPPSPEPPPPSSL 178


>At5g03980.1 68418.m00378 GDSL-motif lipase/hydrolase family protein
           similar to lipase [Arabidopsis thaliana] GI:1145627;
           contains Pfam profile:PF00657 Lipase/Acylhydrolase with
           GDSL-like motif
          Length = 323

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +2

Query: 38  AVFQHHFRQQCHATAECHHRYHRFMPANRGVNHRVTDFIASKPQFNAAAYRP 193
           A F+ H R  CH ++    ++  FM    G N     F   KP     +Y P
Sbjct: 100 AWFKGHLRSTCHGSSSDCLKHSLFMVGEIGGNDYNYGFFQGKPMEEIRSYIP 151


>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
            P-glycoprotein homologue GI:2292907 from [Hordeum vulgare
            subsp. vulgare]
          Length = 1225

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 396  DAMEKVVTGEADLAIAGKPETLPGAVAFSMLENLAVV 286
            DA+E+++ G   + IA +  T+      ++LEN AVV
Sbjct: 1161 DALERLMVGRTSVVIAHRLSTIQKCDTIAVLENGAVV 1197


>At3g18890.1 68416.m02399 expressed protein similar to UV-B and
           ozone similarly regulated protein 1 UOS1 [Pisum sativum]
           GI:20339364
          Length = 641

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 296 RFSSIENATAPGKVSGLPAIARSASPVTTFSIASAASP 409
           RFS  +N +  GK        R++ P+   S+ + ASP
Sbjct: 36  RFSGFKNHSVSGKSRSFDLSLRASGPIRASSVVTEASP 73


>At1g66145.1 68414.m07507 CLE18, putative CLAVATA3/ESR-Related 18
           (CLE18)
          Length = 101

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 348 PQSPDPLHQ*PPFPSHLPHH 407
           P  PDPLH  PP PS   HH
Sbjct: 40  PTGPDPLHN-PPQPSPKHHH 58


>At5g53130.1 68418.m06604 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC1) almost identical
           to cyclic nucleotide-regulated ion channel 1 pir:T51354,
           GI:11357236 from [Arabidopsis thaliana]
          Length = 716

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 355 RQIRFTSDHLFHRICRITSSKFNLHRRVFRAEGFQNRRQMAVGSGHRAEDMYSP 516
           R I   SD  F+R    +S++  L +R +++  F+      +GS H+  D   P
Sbjct: 38  RTISSISDK-FYRSFESSSARIKLFKRSYKSYSFKEAVSKGIGSTHKILDPQGP 90


>At3g14810.1 68416.m01871 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 853

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = -1

Query: 328 RRSGVFDAGESGSSADCPRAALPGANQVSVEKPDWSTVPFIMADQGPVRRRIELWF 161
           RRSG+F +G  G S   P+A  PG N    E+ +    PF+  D     +R +L F
Sbjct: 218 RRSGIFKSGFLGKS---PKAGTPGRNGFEEEEEE---DPFLDEDLPEEFKRDKLSF 267


>At5g52680.1 68418.m06540 heavy-metal-associated domain-containing
           protein low similarity to pneumococcal surface protein A
           PspA [Streptococcus pneumoniae] GI:7800654; contains
           Pfam profile PF00403: Heavy-metal-associated domain
          Length = 238

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 1   ALKSSRGYAPVRGCFPAPLPATMPRHSRVPPSIPS 105
           A K+SR  APV    P   PA  P+ +  PPS+P+
Sbjct: 177 ARKTSRVPAPV----PVRAPAPTPKPAPAPPSVPA 207


>At5g37040.1 68418.m04442 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 242

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 211 FIMADQGPVRRRIELWFRRNKISN 140
           F + +Q    R+IE+W  +NKI N
Sbjct: 138 FSVLEQSKKTRKIEIWVTKNKIGN 161


>At5g01090.1 68418.m00013 legume lectin family protein contains Pfam
           domain, PF00139: Legume lectins beta domain
          Length = 353

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 453 SFRAEHPSVEIKLTTGDAADAMEKVVTGEADLAIAGK 343
           SF+  HPS+ I     D  D  + V  GE  + + GK
Sbjct: 250 SFKLRHPSMRIHSQPLDPNDVSKTVKEGEKTVEVKGK 286


>At4g34150.1 68417.m04846 C2 domain-containing protein similar to
           calcium-dependent protein kinase [Dunaliella
           tertiolecta] GI:6644464; contains Pfam profile PF00168:
           C2 domain
          Length = 247

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 10  SSRGYAPVRGCFPAPLPATMPRHSRVPPSIPSLHARQPW 126
           S+ GY P+   +P P P++       PP  PS + + P+
Sbjct: 201 STSGYPPIPSAYPPPPPSSAYPPQPYPPQ-PSYYPQGPY 238


>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 429

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 273 RGQSALLPDSPASKTPLRRARFPVYPQSPDP-LHQ*P-PFPSHLPHHQ**V*SPP 431
           +  S  L +SP    P  R + P Y   P+P ++  P P P + P  +  + SPP
Sbjct: 45  KNYSPYLSESPPPPPPQYRRQEPKYTPHPEPNVYDSPTPLPYYFPFPKLDIKSPP 99


>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
           protein 
          Length = 477

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
 Frame = +3

Query: 264 RAARGQSALLPDS-PASKTPLRRARFPVYPQSPDPLHQ*PPFPSHLPHHQ**V*SPPTGV 440
           R  +G SAL   + P +  P R    P  P    P H   P  S LPH    V       
Sbjct: 384 RRPKGNSALNHHTAPPTPAPHRSQPHPPAPNPAPPRHHAIPVSSPLPH----VVFAHIPP 439

Query: 441 PRGRIPESAADGCRQRSPS 497
           P    PES   G +  SP+
Sbjct: 440 PSKSSPESEPTGEKSPSPA 458


>At3g13460.2 68416.m01694 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 664

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 311 ENATAPGKVSGLPAIARSASPVTTFSIASAASPVVSLISTDGC 439
           E+ATA       PA  +++S V      S A PV   +  +GC
Sbjct: 622 ESATAESASKESPAAVQTSSDVKVAENGSVAKPVTGDVVANGC 664


>At3g13460.1 68416.m01693 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 667

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 311 ENATAPGKVSGLPAIARSASPVTTFSIASAASPVVSLISTDGC 439
           E+ATA       PA  +++S V      S A PV   +  +GC
Sbjct: 625 ESATAESASKESPAAVQTSSDVKVAENGSVAKPVTGDVVANGC 667


>At2g31020.1 68415.m03782 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 760

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 220 TVPFIMADQGPVRRRIELWFRRNKISNPMIY 128
           ++ ++M DQG V     LW R  +  NP  Y
Sbjct: 622 SIHYVMVDQGKVNESHLLWKRNKQPENPTKY 652


>At1g31430.1 68414.m03849 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 570

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 416 SLIST-DGCSARKDSRIGGRWL*AAVTEQKICIRQXATALADRWC 547
           +++ST   CSA K+  IG R     VTE ++ +R    AL D +C
Sbjct: 150 TIVSTLSACSALKNLEIGERIYRFVVTEFEMSVR-IGNALVDMFC 193


>At1g52030.2 68414.m05870 myrosinase-binding protein, putative
           (F-ATMBP) identical to SP|Q9SAV1 Myrosinase binding
           protein-like f-AtMBP [Arabidopsis thaliana]; similar to
           myrosinase binding protein GI:1711295 from [Brassica
           napus]; contains Pfam PF01419: Jacalin-like lectin
           domain; identical to cDNA myrosinase-binding
           protein-like protein (MBP1.2)  GI:6760446
          Length = 642

 Score = 23.8 bits (49), Expect(2) = 8.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 22  YAPVRGCFPAPLPATMPRHSRVPPSIPS 105
           +AP+    PAP PA  P  +  P   P+
Sbjct: 289 FAPLPAPTPAPAPAPAPAPAPAPSPAPA 316



 Score = 21.4 bits (43), Expect(2) = 8.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 187 PAPDRP**TAPLTSPASLPTP 249
           PAP     +AP+ +PA  P P
Sbjct: 309 PAPSPAPASAPVPAPAPTPAP 329


>At1g52030.1 68414.m05869 myrosinase-binding protein, putative
           (F-ATMBP) identical to SP|Q9SAV1 Myrosinase binding
           protein-like f-AtMBP [Arabidopsis thaliana]; similar to
           myrosinase binding protein GI:1711295 from [Brassica
           napus]; contains Pfam PF01419: Jacalin-like lectin
           domain; identical to cDNA myrosinase-binding
           protein-like protein (MBP1.2)  GI:6760446
          Length = 642

 Score = 23.8 bits (49), Expect(2) = 8.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 22  YAPVRGCFPAPLPATMPRHSRVPPSIPS 105
           +AP+    PAP PA  P  +  P   P+
Sbjct: 289 FAPLPAPTPAPAPAPAPAPAPAPSPAPA 316



 Score = 21.4 bits (43), Expect(2) = 8.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 187 PAPDRP**TAPLTSPASLPTP 249
           PAP     +AP+ +PA  P P
Sbjct: 309 PAPSPAPASAPVPAPAPTPAP 329


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,806,174
Number of Sequences: 28952
Number of extensions: 335096
Number of successful extensions: 1293
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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