Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30036
(575 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 123 1e-28
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 121 4e-28
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 109 2e-24
At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom... 31 0.42
At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 31 0.55
At3g28360.1 68416.m03544 ABC transporter family protein similar ... 29 1.7
At3g28415.1 68416.m03551 P-glycoprotein, putative contains ATP-b... 28 3.9
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g... 28 3.9
At1g05440.1 68414.m00552 expressed protein ; expression supporte... 28 3.9
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 28 5.1
At1g76980.1 68414.m08963 expressed protein 28 5.1
At1g80010.1 68414.m09362 far-red impaired responsive protein, pu... 27 6.8
At1g32190.1 68414.m03959 expressed protein 27 6.8
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g... 27 9.0
At3g28345.1 68416.m03541 ABC transporter family protein similar ... 27 9.0
>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
to GB:P42791
Length = 187
Score = 123 bits (296), Expect = 1e-28
Identities = 59/86 (68%), Positives = 69/86 (80%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 YKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHF 435
++IP M V AL TE+ARARI AGGE LTFDQLALRAP G+ TVL++G +N+REAV+HF
Sbjct: 92 HEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHF 151
Query: 436 GPAPGAPRSHTKPYVRTKGH--EKAR 507
GPAPG P SH+KPYVR KG EKAR
Sbjct: 152 GPAPGVPHSHSKPYVRAKGRKFEKAR 177
Score = 67.3 bits (157), Expect = 7e-12
Identities = 33/80 (41%), Positives = 50/80 (62%)
Frame = +2
Query: 11 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLASHM 190
+K +RT KS D+ TN+KFN ++L+RLFMS++N+ P+S+SRL M
Sbjct: 12 KKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFM 71
Query: 191 KKPTREGLIAVVVGTVTNDV 250
+E IAV+VGT+T+D+
Sbjct: 72 --TGKEDKIAVLVGTITDDL 89
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 121 bits (291), Expect = 4e-28
Identities = 59/86 (68%), Positives = 69/86 (80%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 YKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHF 435
++IP M V AL TE+ARARI AGGE LTFDQLALRAP G+ TVL++G +N+REAV+HF
Sbjct: 92 HEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHF 151
Query: 436 GPAPGAPRSHTKPYVRTKGH--EKAR 507
GPAPG P S+TKPYVR KG EKAR
Sbjct: 152 GPAPGVPHSNTKPYVRHKGRKFEKAR 177
Score = 62.9 bits (146), Expect = 1e-10
Identities = 30/80 (37%), Positives = 49/80 (61%)
Frame = +2
Query: 11 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLASHM 190
+K +RT KS D+ +N+ FN ++L+RLFMS++N+ P+S+SRL M
Sbjct: 12 KKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFM 71
Query: 191 KKPTREGLIAVVVGTVTNDV 250
++ IAV+VGT+T+D+
Sbjct: 72 --TGKDDKIAVLVGTITDDL 89
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 109 bits (261), Expect = 2e-24
Identities = 52/78 (66%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
Frame = +1
Query: 262 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPT-GKKTVLVQGQRNAREAVRHFG 438
+P +TV AL TE ARARI AGGE LTFDQLAL PT + TVL++G +N REAV+HFG
Sbjct: 41 VPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFG 100
Query: 439 PAPGAPRSHTKPYVRTKG 492
PAPG P SHTKPYVR G
Sbjct: 101 PAPGVPHSHTKPYVRQTG 118
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/38 (52%), Positives = 30/38 (78%)
Frame = +2
Query: 137 MSRINRPPISVSRLASHMKKPTREGLIAVVVGTVTNDV 250
MS++N+ P+S+SRL +M ++G IAV+VGTVT+DV
Sbjct: 1 MSKVNKAPLSLSRLVRYMDG--KDGKIAVIVGTVTDDV 36
>At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to
homeodomain transcription factor (AGL30) GI:3461830 from
[Arabidopsis thaliana]; contains Pfam domain PF00319:
SRF-type transcription factor (DNA-binding and
dimerisation domain); PMID: 12837945
Length = 389
Score = 31.5 bits (68), Expect = 0.42
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 439 GQSDALPHEHFADLVPVLSSCQSEHEEPADQ 347
G S LPH +PV SSC E +P DQ
Sbjct: 223 GDSSFLPHREMDGSIPVYSSCFFESTKPEDQ 253
>At2g02640.1 68415.m00203 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 31.1 bits (67), Expect = 0.55
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 282 CSSCYRKSSCTHFGCWRRNSYF 347
CS+C RKS+ + C+ RN YF
Sbjct: 423 CSACMRKSNGFGYSCYNRNCYF 444
>At3g28360.1 68416.m03544 ABC transporter family protein similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1158
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 334 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 426
E L FD L L+ P+GK LV G + + V
Sbjct: 290 ETLIFDDLCLKIPSGKTVALVGGSGSGKSTV 320
>At3g28415.1 68416.m03551 P-glycoprotein, putative contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1221
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 346 FDQLALRAPTGKKTVLVQGQRNAREAV 426
FD L LR P+GK LV G + + V
Sbjct: 356 FDDLCLRIPSGKSVALVGGSGSGKSTV 382
>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1225
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 346 FDQLALRAPTGKKTVLVQGQRNAREAV 426
FD L LR P+GK LV G + + V
Sbjct: 365 FDDLCLRVPSGKTVALVGGSGSGKSTV 391
>At1g05440.1 68414.m00552 expressed protein ; expression supported
by MPSS
Length = 393
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 423 CLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSF 301
CL S++ TL L +S+ ++L + NF S+ ++ TSF
Sbjct: 71 CLDSLNATLDLMPLSVQKSSLTKLSSASNFKSTVESTPTSF 111
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 110 NQIVLRRLFMSRINRPPISVSRLASHMKKPTREGLI 217
+Q V + S INRPP+ + H R+GL+
Sbjct: 34 SQTVHSHAYHSGINRPPVETKPVTEHKSFTRRDGLL 69
>At1g76980.1 68414.m08963 expressed protein
Length = 258
Score = 27.9 bits (59), Expect = 5.1
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -3
Query: 375 SRSTKSQLIKSK-NFSSSSQNACTSFFGNMKSSHRHLRYLVRLTSFVTVPTTTAIKPSRV 199
S S +SQ + S+ N SS + +S N S LRY L + P SR+
Sbjct: 196 SESRRSQSVVSRINSGSSKSSGGSSSRSNSDRSRNSLRYPQTLANLFRNPLRCFASSSRI 255
Query: 198 GFF 190
FF
Sbjct: 256 CFF 258
>At1g80010.1 68414.m09362 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 696
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 519 HDDWPCFFMSLGANIGFSVRARCSWSR 439
+DD F+ S +GF++R + SW++
Sbjct: 75 YDDAYSFYNSYARELGFAIRVKSSWTK 101
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 27.5 bits (58), Expect = 6.8
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 282 CSSCYRKSSCTHFGCWR 332
CSSC+ K C CW+
Sbjct: 359 CSSCFGKPKCPKCSCWK 375
>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1240
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 334 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 426
E FD L L+ P GK LV G + + V
Sbjct: 373 ETTIFDDLCLKIPAGKTVALVGGSGSGKSTV 403
>At3g28345.1 68416.m03541 ABC transporter family protein similar to
P-glycoprotein [Arabidopsis thaliana] GI:3849833;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1240
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 334 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 426
E FD LR P+GK LV G + + V
Sbjct: 373 ETSIFDDFCLRVPSGKTVALVGGSGSGKSTV 403
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,902,662
Number of Sequences: 28952
Number of extensions: 279264
Number of successful extensions: 781
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -